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Lieber Institute for Brain Development

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  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 91 20

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 77 31

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 33 4

  4. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 22 9

  5. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 21 3

  6. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 11

Repositories

Showing 10 of 122 repositories
  • goesHyde_mdd_rnaseq Public

    Fernando Goes and Thomas Hyde MDD RNA-seq project

    LieberInstitute/goesHyde_mdd_rnaseq’s past year of commit activity
    HTML 1 0 7 0 Updated Mar 12, 2025
  • SPEAQeasy Public

    SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

    LieberInstitute/SPEAQeasy’s past year of commit activity
    HTML 6 MIT 4 20 0 Updated Mar 11, 2025
  • Human_DLPFC_Deconvolution Public
    LieberInstitute/Human_DLPFC_Deconvolution’s past year of commit activity
    Roff 3 MIT 0 0 0 Updated Mar 11, 2025
  • spatial_hpc Public

    Repository for the spatial (U01) hippocampus (hipc) project

    LieberInstitute/spatial_hpc’s past year of commit activity
    HTML 2 0 1 0 Updated Mar 6, 2025
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 3 1 5 0 Updated Mar 4, 2025
  • Habenula_Pilot Public

    habenulaPilot project code repository

    LieberInstitute/Habenula_Pilot’s past year of commit activity
    HTML 0 0 2 0 Updated Mar 3, 2025
  • spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    LieberInstitute/spatialLIBD’s past year of commit activity
    R 91 20 20 0 Updated Feb 28, 2025
  • Posit_Connect_shiny_apps Public

    Code for Posit Connect R shiny apps (spatialLIBD, iSEE, ...)

    LieberInstitute/Posit_Connect_shiny_apps’s past year of commit activity
    R 0 0 0 0 Updated Feb 28, 2025
  • spatialDLPFC_Visium_Sp09_pseudobulk- Public

    Testing GitHub and Posit Connect integration using spatialDLPFC files

    LieberInstitute/spatialDLPFC_Visium_Sp09_pseudobulk-’s past year of commit activity
    R 0 0 0 0 Updated Feb 28, 2025
  • spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    LieberInstitute/spatialDLPFC’s past year of commit activity
    HTML 21 3 0 0 Updated Feb 19, 2025
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