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[bot] Fast-forward for 25.3.18 #1174

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Merged
github-actions merged 5 commits into from
Sep 4, 2025
Merged

[bot] Fast-forward for 25.3.18 #1174

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72c0218
Update HTSJDK and picard versions (#1139)
bbimber Jul 31, 2025
57d4e0c
Tomcat version bump (#1151)
labkey-martyp Aug 18, 2025
3c19124
update spring version (#1153)
labkey-martyp Aug 20, 2025
b2aa5a6
Update tika version (#1163)
labkey-jeckels Sep 1, 2025
4f30fa7
Update labkeyVersion to 25.3.18
labkey-teamcity Sep 4, 2025
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22 changes: 11 additions & 11 deletions gradle.properties
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Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@ buildFromSource=true

# The default version for LabKey artifacts that are built or that we depend on.
# override in an individual module's gradle.properties file as necessary
labkeyVersion=25.3.17
labkeyVersion=25.3.18
labkeyClientApiVersion=6.2.0

# Version numbers for the various binary artifacts that are included when
Expand Down Expand Up @@ -99,12 +99,12 @@ apacheDirectoryVersion=2.1.7
apacheMinaVersion=2.2.4

# Usually matches the version specified as a Spring Boot dependency (see springBootVersion below)
apacheTomcatVersion=10.1.43
apacheTomcatVersion=10.1.44

# (mothership) -> json-path -> json-smart -> accessor-smart
# (core) -> graalvm
# tika
asmVersion=9.7.1
asmVersion=9.8

# Apache Batik -- Batik version needs to be compatible with Apache FOP, but we need to pull in batik-codec separately
batikVersion=1.18
Expand All @@ -125,7 +125,7 @@ commonsBeanutilsVersion=1.11.0
commonsCodecVersion=1.17.1
commonsCollections4Version=4.4
commonsCollectionsVersion=3.2.2
commonsCompressVersion=1.27.1
commonsCompressVersion=1.28.0
commonsDbcpVersion=1.4
commonsDigesterVersion=1.8.1
commonsDiscoveryVersion=0.2
Expand Down Expand Up @@ -180,7 +180,7 @@ hadoopHdfsClientVersion=3.4.1
hamcrestVersion=2.2

# Note: if changing this, we might need to match with the picard version in the SequenceAnalysis module build.gradle
htsjdkVersion=4.0.0
htsjdkVersion=4.3.0

httpclient5Version=5.4.3
httpcore5Version=5.3.4
Expand Down Expand Up @@ -230,7 +230,7 @@ jsr305Version=3.0.2

orgJsonVersion=20250107

jsoupVersion=1.18.3
jsoupVersion=1.21.1

junitVersion=4.13.2

Expand Down Expand Up @@ -259,7 +259,7 @@ opencsvVersion=2.3
openTracingVersion=0.33.0

# sync with version Tika ships
pdfboxVersion=3.0.3
pdfboxVersion=3.0.4

# sync with version Tika ships
poiVersion=5.4.0
Expand All @@ -282,17 +282,17 @@ romeVersion=2.1.0
servletApiVersion=6.0.0

# this version is forced for compatibility with pipeline and tika
slf4jLog4j12Version=2.0.16
slf4jLog4j12Version=2.0.17
# this version is forced for compatibility with api, LDK, and workflow
slf4jLog4jApiVersion=2.0.16
slf4jLog4jApiVersion=2.0.17

# This is a dependency for HTSJDK. Force version for CVE-2023-43642
snappyJavaVersion=1.1.10.7

# Also, update apacheTomcatVersion above to match Spring Boot's Tomcat dependency version
springBootVersion=3.5.3
# This usually matches the Spring Framework version dictated by springBootVersion
springVersion=6.2.8
springVersion=6.2.10

sqliteJdbcVersion=3.49.1.0

Expand All @@ -302,7 +302,7 @@ stax2ApiVersion=4.2.2
thumbnailatorVersion=0.4.20

# used for tika-core in API and tika-parsers in search
tikaVersion=3.0.0
tikaVersion=3.2.2

# sync with Tika
tukaaniXZVersion=1.10
Expand Down