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Merged
Ohsudev merged 2 commits into from
Jan 8, 2026
Merged

Created a new reporting program called "Tissue Distribution by Animal… #1597

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accec52
Created a new reporting program called "Tissue Distribution by Animal…
Ohsudev Jan 7, 2026
73cf7db
Created a new reporting program called "Tissue Distribution by Animal…
Ohsudev Jan 7, 2026
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2 changes: 1 addition & 1 deletion onprc_ehr/resources/queries/study/TissueDistributionSummaryCalendarYr.query.xml
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Expand Up @@ -2,7 +2,7 @@
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="tissueDistributionSummary" tableDbType="TABLE">
<tableTitle>Tissue Distribution Summary</tableTitle>
<tableTitle>Tissue Distribution Summary By Calendar Year</tableTitle>
<columns>
<column columnName="totalSamples">
<columnTitle>Total Samples</columnTitle>
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31 changes: 31 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDCalendarYr.query.xml
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<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="tissueDistributionSummaryByAnimalIDCalendarYr" tableDbType="TABLE">
<tableTitle>Tissue Distribution Summary By Animal ID Per Calendar Year</tableTitle>
<columns>
<column columnName="totalSamples">
<columnTitle>Total Samples</columnTitle>
<url>/query/executeQuery.view?
schemaName=study&amp;
query.queryName=Tissue Distributions&amp;
query.calendarYear~eq=${calendarYear}&amp;
query.id~eq=${id}&amp;
query.QCState/Label~in=Completed;Request: Pending&amp;
</url>
</column>
<column columnName="distinctAnimals">
<columnTitle>Distinct Animal IDs</columnTitle>
<url>/query/executeQuery.view?
schemaName=study&amp;
query.queryName=Tissue Distributions&amp;
query.calendarYear~eq=${calendarYear}&amp;
query.id~eq=${id}&amp;
query.QCState/Label~in=Completed;Request: Pending&amp;
</url>
</column>
</columns>
</table>
</tables>
</metadata>
</query>
15 changes: 15 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDCalendarYr.sql
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-- Added: 1-2-2018 R.Blasa
SELECT
calendarYear,
t.id,
-- t.recipient.affiliation,
-- t.requestCategory,
count(t.Id) as totalSamples,
count(distinct t.Id) as distinctAnimals,
count(distinct t.recipient) as distinctRecipients

FROM study.tissueDistributions t
Where t.taskid is not null
And t.QCState.Label in ('Request: Pending','Completed')

GROUP BY calendarYear, t.id
6 changes: 6 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDCalendarYr/.qview.xml
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<customView xmlns="http://labkey.org/data/xml/queryCustomView">
<sorts>
<sort column="calendarYear" descending="true"/>
<sort column="id"/>
</sorts>
</customView>
31 changes: 31 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDFiscalYr.query.xml
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<query xmlns="http://labkey.org/data/xml/query">
<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="tissueDistributionSummaryByAnimalIDFiscalYr" tableDbType="TABLE">
<tableTitle>Tissue Distribution Summary By Animal ID Per Fiscal Year</tableTitle>
<columns>
<column columnName="totalSamples">
<columnTitle>Total Samples</columnTitle>
<url>/query/executeQuery.view?
schemaName=study&amp;
query.queryName=Tissue Distributions&amp;
query.fiscalYear~eq=${fiscalYear}&amp;
query.id~eq=${id}&amp;
query.QCState/Label~in=Completed;Request: Pending&amp;
</url>
</column>
<column columnName="distinctAnimals">
<columnTitle>Distinct Animal IDs</columnTitle>
<url>/query/executeQuery.view?
schemaName=study&amp;
query.queryName=Tissue Distributions&amp;
query.fiscalYear~eq=${fiscalYear}&amp;
query.id~eq=${id}&amp;
query.QCState/Label~in=Completed;Request: Pending&amp;
</url>
</column>
</columns>
</table>
</tables>
</metadata>
</query>
13 changes: 13 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDFiscalYr.sql
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-- Added: 1-2-2018 R.Blasa
SELECT
fiscalYear,
t.id,
count(t.Id) as totalSamples,
count(distinct t.Id) as distinctAnimals,
count(distinct t.recipient) as distinctRecipients

FROM study.tissueDistributions t
Where t.taskid is not null
And t.QCState.Label in ('Request: Pending','Completed')

GROUP BY fiscalYear, t.id
6 changes: 6 additions & 0 deletions onprc_ehr/resources/queries/study/TissueDistributionSummarybyAnimalIDFiscalYr/.qview.xml
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<customView xmlns="http://labkey.org/data/xml/queryCustomView">
<sorts>
<sort column="fiscalYear" descending="true"/>
<sort column="id"/>
</sorts>
</customView>
2 changes: 1 addition & 1 deletion onprc_ehr/resources/queries/study/TissueDistributionSummarybyRecipientCalendarYr.query.xml
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<metadata>
<tables xmlns="http://labkey.org/data/xml">
<table tableName="tissueDistributionSummaryByRecipient" tableDbType="TABLE">
<tableTitle>Tissue Distribution Summary By Recipient</tableTitle>
<tableTitle>Tissue Distribution Summary By Recipient By Calendar Year</tableTitle>
<columns>
<column columnName="totalSamples">
<columnTitle>Total Samples</columnTitle>
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9 changes: 8 additions & 1 deletion onprc_ehr/src/org/labkey/onprc_ehr/ONPRC_EHRModule.java
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Expand Up @@ -498,7 +498,14 @@ public String toString()
// Added 1-2-2018 R.Blasa
EHRService.get().registerReportLink(EHRService.REPORT_LINK_TYPE.moreReports, "View Tissue Distribution Summary, By Recipient(Calendar Year)", this, DetailsURL.fromString("/query/executeQuery.view?schemaName=study&query.queryName=tissueDistributionSummaryByRecipientCalendarYr"), "Pathology");

//Added: 12-7-2017 R.Blasa
// Added 1-7-2026 R.Blasa
EHRService.get().registerReportLink(EHRService.REPORT_LINK_TYPE.moreReports, "View Tissue Distribution Summary, By Animal ID(Calendar Year)", this, DetailsURL.fromString("/query/executeQuery.view?schemaName=study&query.queryName=tissueDistributionSummaryByAnimalIDCalendarYr"), "Pathology");

// Added 1-7-2026 R.Blasa
EHRService.get().registerReportLink(EHRService.REPORT_LINK_TYPE.moreReports, "View Tissue Distribution Summary, By Animal ID(Fiscal Year)", this, DetailsURL.fromString("/query/executeQuery.view?schemaName=study&query.queryName=tissueDistributionSummaryByAnimalIDFiscalYr"), "Pathology");


//Added: 12-7-2017 R.Blasa
// EHRService.get().registerReportLink(EHRService.REPORT_LINK_TYPE.moreReports, "Animal Census on a Given Date Range", this, DetailsURL.fromString("/onprc_ehr/CensusGivenDateRange.view"), "Colony Management");

// Added: 2-2-2021 R.Blasa
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