Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
16 changes: 8 additions & 8 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -35,27 +35,27 @@ BOSS is compiled for linux using 32 bits libraries so it can not run in windows
1.1 - Set the BOSSdir enviromental variable:

- bashrc

export BOSSdir=PATH_TO_BOSS_DIRECTORY
- cshrc

setenv BOSSdir PATH_TO_BOSS_DIRECTORY

**TIP:** add this command line in your ~/.bashrc or ~/.cshrc file.

2 - Download and install conda (anaconda or minicoda):
2 - Download and install conda (anaconda or minicoda):

wget https://repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh

or

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

3 - Create and activate an enviroment for python3.7 (Everything was tested with 3.7):
3 - Create and activate an enviroment for python3.7 (Everything was tested with 3.7, but it should work with python above 3.7 as well):

conda create --name py37 python=3.7

conda activate py37
conda activate py37
**Optional TIP:** add this line to your .bashrc/.cshrc,....

4- Install rdkit and openbabel in py37 enviroment
Expand Down Expand Up @@ -102,7 +102,7 @@ For alchemical transformations:

- CM1A is automatically scaled by 1.14 in neutral molecules.
- CM1A-LBCC is just for neutral molecules and it is also scaled by 1.14.

## **Examples**

Molecule template generation:
Expand Down Expand Up @@ -135,8 +135,8 @@ For help use the -h flag:

Please do not forget to cite the following references:

1. LigParGen web server: an automatic OPLS-AA parameter generator for organic ligands
Leela S. Dodda Israel Cabeza de Vaca Julian Tirado-Rives William L. Jorgensen
1. LigParGen web server: an automatic OPLS-AA parameter generator for organic ligands
Leela S. Dodda Israel Cabeza de Vaca Julian Tirado-Rives William L. Jorgensen
Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W331–W336

2. 1.14*CM1A-LBCC: Localized Bond-Charge Corrected CM1A Charges for Condensed-Phase Simulations
7 changes: 6 additions & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,11 @@
'Development Status :: Release',
'License :: MIT License',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Programming Language :: Python :: 3.12',
"Operating System :: OS Linux",
'Topic :: Molecular Mechanics :: Force Field parameterization',
],
Expand All @@ -29,5 +34,5 @@
'console_scripts': ['ligpargen=ligpargen.ligpargen:main'],
},
include_package_data=True,
python_requires='==3.7.*',
python_requires='>=3.7',
zip_safe=False)