New version of the P Model architecture

[davidorme]

Description

This PR is to bring all of the collected functionality in branch associated with the 2.0.0 meta issue (#383) down into develop. This:

• allows us to make a new release 2.0.0-rc2
• brings all of that new architecture into the main line to stop feature branches creeping apart.

Important

This is a huge PR, but the commits have all been reviewed by sub-PRs onto this branch, so it is pre-reviewed.

I'll need to make some pushes into:

• Annual fAPAR_max and LAI_max #403
• Adding two leaf irradience model #245

in order to update them to this.

This doesn't completely close down all of the child issues in #383 but we want to bank these changes now.

Type of change

• New feature (non-breaking change which adds functionality)
• Optimization (back-end change that speeds up the code)
• Bug fix (non-breaking change which fixes an issue)

Key checklist

• Make sure you've run the pre-commit checks: $ pre-commit run -a
• All tests pass: $ poetry run pytest

Further checks

• Code is commented, particularly in hard-to-understand areas
• Tests added that prove fix is effective or that feature works

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 97.26316% with 13 lines in your changes missing coverage. Please review.

Project coverage is 96.73%. Comparing base (56ccf57) to head (9bad2be).
Report is 71 commits behind head on develop.

Files with missing lines	Patch %	Lines
pyrealm/pmodel/pmodel_environment.py	77.41%	7 Missing ⚠️
pyrealm/pmodel/pmodel.py	97.36%	5 Missing ⚠️
pyrealm/pmodel/acclimation.py	99.41%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #442      +/-   ##
===========================================
+ Coverage    96.27%   96.73%   +0.45%     
===========================================
  Files           34       35       +1     
  Lines         2659     2661       +2     
===========================================
+ Hits          2560     2574      +14     
+ Misses          99       87      -12     

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[MarionBWeinzierl]

With the change in the time the comments needs adapting - it's now noon until midnight

Suggested change

	# A five day time series running from noon until noon
	# A five day time series running from noon until midnight

[j-emberton]

Great work David