Develop #505
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Develop #505
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…ing mzml argument with origin
Merge from master
merge from master
Issue 497 fix
…serialized in isatab2json conversion
Fairly significant changes to check_protocol_fields
Changed messaging on study assays errors
Extended 511
The problem with trying to do this is that some of the protocol types in the yaml file have "Sample Name" and "Extract Name" as the headers and this causes those headers to be added multiple times. It might be better to leave those empty. Also might be good to change headers to a list to get rid of the special case for "nucleic acid hybridization".
For some reason the bottom part of the function only logged errors and did not add them to the validator dictionary. They also did not indicate which filename the error was from, so tracking down where the problem is was difficult. This might just be an oversight since the warnings at the top of the function were just fine.
Added better messaging
Refactor isatab loader
Protocol types refactor
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Closing as all the changes have been included in issue-511, which is merged in develop now |
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closes #498, #500, #501