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* chore(deps): bump pre-commit/action from 2.0.3 to 3.0.0 (#542) Bumps [pre-commit/action](https://github.com/pre-commit/action) from 2.0.3 to 3.0.0. - [Release notes](https://github.com/pre-commit/action/releases) - [Commits](pre-commit/action@v2.0.3...v3.0.0) --- updated-dependencies: - dependency-name: pre-commit/action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * fix: voc probability (#541) * fix: Replace outdated df append (#544) * replaced all df.append with pd.concat * replaced df.append with pd.concat * replace df.append with pd.concat * replaced df.append with pd.concat * replaced df.append with pd.concat * replaced df.append with pd.concat Co-authored-by: lenakinzel <l.kinzel@web.de> Co-authored-by: Alexander Thomas <77535027+alethomas@users.noreply.github.com> * refactor: fgbio read clipping (#545) * change primer file formatting * change read clipping * fmt * fix primer clipping plot * fix primer clipping plot * fix * fix * typo * test * Update pangolin to 4.1 (#546) Co-authored-by: thomasbtf <thomasbtf@users.noreply.github.com> Co-authored-by: Ann-Kathrin Brüggemann <90249112+AKBrueggemann@users.noreply.github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Alexander Thomas <77535027+alethomas@users.noreply.github.com> Co-authored-by: vBassewitz <104062464+vBassewitz@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: thomasbtf <thomasbtf@users.noreply.github.com> Co-authored-by: Ann-Kathrin Brüggemann <90249112+AKBrueggemann@users.noreply.github.com>
… rules from ref.smk in init.smk
…rigger the rules (not functional yet)
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Description
feat: Added a first init rule
Related Issue
#537
Checklist
pre-commitif needed.CODE_OF_CONDUCT.mddocument.CONTRIBUTING.mdguide.