Revert "Preparing next beta"

This reverts commit 467031b.
IARCbioinfo · May 24, 2019 · 8883a4a · 8883a4a
1 parent 467031b
commit 8883a4a
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/bin/needlestack.r b/bin/needlestack.r
@@ -264,7 +264,7 @@ if(file.exists(out_file)) file.remove(out_file)
 
 write_out("##fileformat=VCFv4.1")
 write_out("##fileDate=",format(Sys.Date(), "%Y%m%d"))
-write_out("##source=needlestack v1.2b")
+write_out("##source=needlestack v1.1")
 write_out("##reference=",fasta_ref)
 write_out("##phasing=none")
 write_out("##filter=\"QVAL > ",GQ_threshold," & ",SB_type,"_SNV < ",SB_threshold_SNV," & ",SB_type,"_INDEL < ",SB_threshold_indel," & min(AO) >= ",min_reads, " & min(AF) >= ",min_af," & min(DP) >= ",min_coverage,"\"")

diff --git a/needlestack.nf b/needlestack.nf
@@ -76,7 +76,7 @@ if (params.help) {
     log.info ' | | | |  __/  __/ (_| | |  __/\\__ \\ || (_| | (__|   <  '
     log.info ' |_| |_|\\___|\\___|\\__,_|_|\\___||___/\\__\\__,_|\\___|_|\\_\\ '
     log.info '                                                        '
-    log.info 'NEEDLESTACK v1.2b: A MULTI-SAMPLE SOMATIC VARIANT CALLER'
+    log.info 'NEEDLESTACK v1.1: A MULTI-SAMPLE SOMATIC VARIANT CALLER'
     log.info '--------------------------------------------------------'
     log.info 'Copyright (C) IARC/WHO'
     log.info 'This program comes with ABSOLUTELY NO WARRANTY; for details see LICENSE.txt'
@@ -139,7 +139,7 @@ log.info ' |  _ \\ / _ \\/ _ \\/ _` | |/ _ \\/ __| __/ _` |/ __| |/ / '
 log.info ' | | | |  __/  __/ (_| | |  __/\\__ \\ || (_| | (__|   <  '
 log.info ' |_| |_|\\___|\\___|\\__,_|_|\\___||___/\\__\\__,_|\\___|_|\\_\\ '
 log.info '                                                        '
-log.info 'NEEDLESTACK v1.2b: A MULTI-SAMPLE SOMATIC VARIANT CALLER'
+log.info 'NEEDLESTACK v1.1: A MULTI-SAMPLE SOMATIC VARIANT CALLER'
 log.info '--------------------------------------------------------'
 log.info 'Copyright (C) IARC/WHO'
 log.info 'This program comes with ABSOLUTELY NO WARRANTY; for details see LICENSE.txt'

diff --git a/nextflow.config b/nextflow.config
@@ -4,7 +4,7 @@ manifest {
     mainScript = 'needlestack.nf'
 }
 
-process.container = 'iarcbioinfo/needlestack:dev'
+process.container = 'iarcbioinfo/needlestack:v1.1'
 
 timeline.enabled = true
 trace.enabled = true