Merge pull request #310 from FoodOntology/issue-309

Add changes to fix #309
FoodOntology · Jun 17, 2024 · d0dc2e6 · d0dc2e6
2 parents e24bb69 + 897f7ea
commit d0dc2e6
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/src/ontology/scripts/organism_parts.py b/src/ontology/scripts/organism_parts.py
@@ -228,6 +228,9 @@ def main():
 
                             if item['parent class'] is None:
                                 parent_class = ''
+                            # Special case for row with FOODON:00003004 set parent class to be 'animal_parent' from species list
+                            elif s['animal_parent'] and item['ID'] == 'FOODON:00003004':
+                                parent_class = s['animal_parent']
                             else:
                                 parent_class = item['parent class'].format(organism=species_label, organism_base=s['species'])
 
@@ -262,6 +265,10 @@ def main():
                             else:
                                 if item['Equivalence axiom'] is None:
                                     equivalence = ''
+                                # Special case for row with FOODON:00003004 and row has an Equivalence axiom
+                                elif s['animal_parent'] and item['ID'] == 'FOODON:00003004':
+                                    equivalence = item['Equivalence axiom'].format(organism=s['species'], organism_base=s['species'], taxon=s['ID'])
+                                    equivalence = equivalence.replace("animal", s['animal_parent'])
                                 else:
                                     equivalence = item['Equivalence axiom'].format(organism=species_label, organism_base=s['species'], taxon=s['ID'])