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PTFI related updates
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@ddooley
ddooley committed Mar 26, 2024
1 parent 8c23483 commit 7a77f7c
Showing 1 changed file with 40 additions and 37 deletions.
77 changes: 40 additions & 37 deletions src/ontology/foodon-edit.ofn
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ Prefix(indexfungorum:=<http://www.indexfungorum.org/names/NamesRecord.asp?Record


Ontology(<http://purl.obolibrary.org/obo/foodon.owl>
<https://github.com/FoodOntology/foodon/releases/download/v2024-02-21/foodon.owl>
<https://github.com/FoodOntology/foodon/releases/download/v2024-03-25/foodon.owl>
Import(<http://purl.obolibrary.org/obo/cdno/releases/2022-12-23/cdno.owl>)
Import(<http://purl.obolibrary.org/obo/foodon/imports/chebi_import.ofn>)
Import(<http://purl.obolibrary.org/obo/foodon/imports/cob_import.ofn>)
Expand Down Expand Up @@ -2397,6 +2397,7 @@ Declaration(Class(obo:FOODON_0002000))
Declaration(Class(obo:FOODON_0002899))
Declaration(Class(obo:FOODON_02020038))
Declaration(Class(obo:FOODON_02020805))
Declaration(Class(obo:FOODON_02021444))
Declaration(Class(obo:FOODON_02021535))
Declaration(Class(obo:FOODON_02021629))
Declaration(Class(obo:FOODON_03000000))
Expand Down Expand Up @@ -8844,6 +8845,7 @@ Declaration(Class(obo:NCBITaxon_126903))
Declaration(Class(obo:NCBITaxon_1276502))
Declaration(Class(obo:NCBITaxon_127826))
Declaration(Class(obo:NCBITaxon_128017))
Declaration(Class(obo:NCBITaxon_128156))
Declaration(Class(obo:NCBITaxon_128608))
Declaration(Class(obo:NCBITaxon_1286125))
Declaration(Class(obo:NCBITaxon_1286129))
Expand Down Expand Up @@ -13223,7 +13225,7 @@ EquivalentClasses(obo:FOODON_00001848 ObjectIntersectionOf(obo:FOODON_00002157 O

# Class: obo:FOODON_00001861 (florida stone crab food product)

EquivalentClasses(obo:FOODON_00001861 ObjectIntersectionOf(obo:FOODON_00001785 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_6781)))
EquivalentClasses(obo:FOODON_00001861 ObjectIntersectionOf(obo:FOODON_02021444 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_6781)))

# Class: obo:FOODON_00001863 (fondant food product)

Expand Down Expand Up @@ -13251,11 +13253,11 @@ EquivalentClasses(obo:FOODON_00001960 ObjectIntersectionOf(obo:FOODON_00002333 O

# Class: obo:FOODON_00001984 (kegani crab food product)

EquivalentClasses(obo:FOODON_00001984 ObjectIntersectionOf(obo:FOODON_00001785 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_299522)))
EquivalentClasses(obo:FOODON_00001984 ObjectIntersectionOf(obo:FOODON_02021444 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_299522)))

# Class: obo:FOODON_00001987 (king crab food product)

EquivalentClasses(obo:FOODON_00001987 ObjectIntersectionOf(obo:FOODON_00001785 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_03412209)))
EquivalentClasses(obo:FOODON_00001987 ObjectIntersectionOf(obo:FOODON_02021444 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_03412209)))

# Class: obo:FOODON_00001988 (konbu vegetable food product)

Expand All @@ -13267,7 +13269,7 @@ SubClassOf(obo:FOODON_00002005 obo:FOODON_00001817)

# Class: obo:FOODON_00002074 (oriental blue crab food product)

EquivalentClasses(obo:FOODON_00002074 ObjectIntersectionOf(obo:FOODON_00001785 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_03412214)))
EquivalentClasses(obo:FOODON_00002074 ObjectIntersectionOf(obo:FOODON_02021444 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_03412214)))

# Class: obo:FOODON_00002158 (food (preserved))

Expand All @@ -13289,7 +13291,7 @@ SubClassOf(obo:FOODON_00002246 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_03

# Class: obo:FOODON_00002247 (snow crab food product)

EquivalentClasses(obo:FOODON_00002247 ObjectIntersectionOf(obo:FOODON_00001785 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_41210)))
EquivalentClasses(obo:FOODON_00002247 ObjectIntersectionOf(obo:FOODON_02021444 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_41210)))

# Class: obo:FOODON_00002285 (yokan)

Expand Down Expand Up @@ -19305,7 +19307,6 @@ AnnotationAssertion(dcterms:date obo:FOODON_00004241 "2022-02-20T05:55:07Z"^^xsd

# Class: obo:FOODON_00004242 (animal food product)

AnnotationAssertion(obo:IAO_0000117 obo:FOODON_00004242 <http://orcid.org/0000-0002-8844-9165>)
SubClassOf(obo:FOODON_00004242 obo:FOODON_00002381)

# Class: obo:FOODON_00004243 (roselle calyx)
Expand Down Expand Up @@ -19853,10 +19854,6 @@ AnnotationAssertion(dcterms:date obo:FOODON_00004336 "2023-03-02T22:41:19Z"^^xsd
AnnotationAssertion(rdfs:label obo:FOODON_00004336 "fungal material"@en)
SubClassOf(obo:FOODON_00004336 obo:FOODON_03420116)

# Class: obo:FOODON_00004337 (animal sub-primal cut)

SubClassOf(obo:FOODON_00004337 ObjectSomeValuesFrom(obo:RO_0001000 obo:FOODON_00001567))

# Class: obo:FOODON_00004339 (ostrich food product)

AnnotationAssertion(obo:IAO_0000117 obo:FOODON_00004339 <https://orcid.org/0000-0002-8844-9165>)
Expand Down Expand Up @@ -20421,13 +20418,6 @@ AnnotationAssertion(dcterms:date obo:FOODON_00004494 "2023-08-03T06:56:17Z"^^xsd
AnnotationAssertion(rdfs:label obo:FOODON_00004494 "piece of ostrich meat"@en)
SubClassOf(obo:FOODON_00004494 obo:FOODON_02010107)

# Class: obo:FOODON_00004499 (piece of beef (boneless))

AnnotationAssertion(dcterms:contributor obo:FOODON_00004499 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:FOODON_00004499 "2023-08-04T23:51:16Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:FOODON_00004499 "piece of beef (boneless)"@en)
SubClassOf(obo:FOODON_00004499 obo:FOODON_02010113)

# Class: obo:FOODON_00004501 (food (thawed))

AnnotationAssertion(obo:IAO_0000114 obo:FOODON_00004501 obo:IAO_0000122)
Expand Down Expand Up @@ -20530,7 +20520,7 @@ AnnotationAssertion(dcterms:date obo:FOODON_00004538 "2023-12-16T00:50:22Z"^^xsd
AnnotationAssertion(rdfs:label obo:FOODON_00004538 "bison carcass"@en)
SubClassOf(obo:FOODON_00004538 obo:FOODON_02010020)

# Class: obo:FOODON_00004539 (herb leaf (fresh))
# Class: obo:FOODON_00004539 (herb (fresh))

AnnotationAssertion(dcterms:contributor obo:FOODON_00004539 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:FOODON_00004539 "2023-12-18T06:46:56Z"^^xsd:dateTime)
Expand Down Expand Up @@ -20641,7 +20631,6 @@ SubClassOf(obo:FOODON_00004555 obo:FOODON_00002454)

AnnotationAssertion(dcterms:contributor obo:FOODON_00004556 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:FOODON_00004556 "2024-02-02T00:31:51Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:FOODON_00004556 "cow foot"@en)

# Class: obo:FOODON_00004557 (pig foot)

Expand All @@ -20655,14 +20644,6 @@ AnnotationAssertion(dcterms:date obo:FOODON_00004558 "2024-02-02T00:39:09Z"^^xsd
AnnotationAssertion(rdfs:label obo:FOODON_00004558 "pig foot (raw)"@en)
SubClassOf(obo:FOODON_00004558 obo:FOODON_00004557)

# Class: obo:FOODON_00004695 (cricket food product)

AnnotationAssertion(obo:IAO_0000115 obo:FOODON_00004695 "A food product with crickets as a defining ingredient."@en)
AnnotationAssertion(dcterms:contributor obo:FOODON_00004695 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:FOODON_00004695 "2024-03-25T08:04:04Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:FOODON_00004695 "cricket food product"@en)
SubClassOf(obo:FOODON_00004695 obo:FOODON_00001177)

# Class: obo:FOODON_02010014 (animal blood)

SubClassOf(obo:FOODON_02010014 obo:FOODON_03302001)
Expand Down Expand Up @@ -24741,7 +24722,7 @@ SubClassOf(obo:FOODON_03307987 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon

SubClassOf(obo:FOODON_03307992 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_52904))

# Class: obo:FOODON_03307996 (atlantic salmon (raw))
# Class: obo:FOODON_03307996 (piece of atlantic salmon meat (raw))

SubClassOf(obo:FOODON_03307996 ObjectSomeValuesFrom(obo:RO_0001000 obo:NCBITaxon_8030))

Expand Down Expand Up @@ -64803,14 +64784,6 @@ AnnotationAssertion(rdfs:comment obo:FOODON_03530145 "LanguaL curation note: Exa
AnnotationAssertion(rdfs:label obo:FOODON_03530145 "rumsteck"@en)
SubClassOf(obo:FOODON_03530145 obo:FOODON_03530141)

# Class: obo:FOODON_03530146 (butchery cut of animal meat)

AnnotationAssertion(obo:IAO_0000412 obo:FOODON_03530146 <http://langual.org>)
AnnotationAssertion(go:hasDbXref obo:FOODON_03530146 langual:Z0146)
AnnotationAssertion(rdfs:comment obo:FOODON_03530146 "A cut of meat may have an arbitrary boundary that does not conform to an anatomical part. For example, a steak can be taken from a variety of locations."@en)
AnnotationAssertion(rdfs:seeAlso obo:FOODON_03530146 <https://inspection.canada.ca/food-labels/labelling/industry/meat-and-poultry-products/meat-cuts/eng/1657909755989/1657909756458>)
AnnotationAssertion(rdfs:seeAlso obo:FOODON_03530146 <https://www.ams.usda.gov/grades-standards/imps>)

# Class: obo:FOODON_03530147 (cheese rind (natural))

AnnotationAssertion(obo:IAO_0000114 obo:FOODON_03530147 obo:IAO_0000428)
Expand Down Expand Up @@ -70174,6 +70147,7 @@ SubClassOf(obo:NCBITaxon_112509 obo:NCBITaxon_4513)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_1125938 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_1125938 "2024-03-23T03:45:55Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_1125938 "Selenicereus costaricensis"@en)
SubClassOf(obo:NCBITaxon_1125938 obo:OBI_0100026)

# Class: obo:NCBITaxon_112728 (Polyprion americanus)

Expand Down Expand Up @@ -71166,6 +71140,11 @@ AnnotationAssertion(go:hasExactSynonym obo:NCBITaxon_128017 "nephelium longanum"
AnnotationAssertion(go:hasNarrowSynonym obo:NCBITaxon_128017 "Dimocarpus longan Lour.")
SubClassOf(obo:NCBITaxon_128017 obo:FOODON_03413391)

# Class: obo:NCBITaxon_128156 (Gryllus assimilis)

AnnotationAssertion(rdfs:label obo:NCBITaxon_128156 "Gryllus assimilis"@en)
SubClassOf(obo:NCBITaxon_128156 obo:OBI_0100026)

# Class: obo:NCBITaxon_128608 (Cinnamomum verum)

AnnotationAssertion(obo:IAO_0000114 obo:NCBITaxon_128608 obo:IAO_0000122)
Expand Down Expand Up @@ -74798,12 +74777,14 @@ SubClassOf(obo:NCBITaxon_190224 obo:FOODON_03414206)
# Class: obo:NCBITaxon_190531 (Vaccinium deliciosum)

AnnotationAssertion(rdfs:label obo:NCBITaxon_190531 "Vaccinium deliciosum"@en)
SubClassOf(obo:NCBITaxon_190531 obo:OBI_0100026)

# Class: obo:NCBITaxon_190542 (Vaccinium membranaceum)

AnnotationAssertion(dcterms:contributor obo:NCBITaxon_190542 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_190542 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_190542 "Vaccinium membranaceum"@en)
SubClassOf(obo:NCBITaxon_190542 obo:OBI_0100026)

# Class: obo:NCBITaxon_190544 (Vaccinium ovalifolium)

Expand Down Expand Up @@ -74943,6 +74924,7 @@ SubClassOf(obo:NCBITaxon_192602 obo:FOODON_03411090)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_193297 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_193297 "2024-03-23T03:07:03Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_193297 "Aronia"@en)
SubClassOf(obo:NCBITaxon_193297 obo:OBI_0100026)

# Class: obo:NCBITaxon_193309 (Pyracantha coccinea)

Expand Down Expand Up @@ -79154,6 +79136,7 @@ SubClassOf(obo:NCBITaxon_302047 obo:FOODON_03412642)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_3031349 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_3031349 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_3031349 "Passiflora edulis f. edulis"@en)
SubClassOf(obo:NCBITaxon_3031349 obo:OBI_0100026)

# Class: obo:NCBITaxon_303741 (Sphoeroides spengleri)

Expand Down Expand Up @@ -83347,6 +83330,7 @@ SubClassOf(obo:NCBITaxon_3918 obo:FOODON_03414742)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_39269 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_39269 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_39269 "Agastache foeniculum"@en)
SubClassOf(obo:NCBITaxon_39269 obo:OBI_0100026)

# Class: obo:NCBITaxon_392747 (Paullinia cupana)

Expand Down Expand Up @@ -84290,6 +84274,7 @@ SubClassOf(obo:NCBITaxon_41522 obo:FOODON_03411179)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_41550 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_41550 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_41550 "Cirsium arvense"@en)
SubClassOf(obo:NCBITaxon_41550 obo:OBI_0100026)

# Class: obo:NCBITaxon_416196 (Citrus australasica)

Expand Down Expand Up @@ -87068,6 +87053,7 @@ SubClassOf(obo:NCBITaxon_491138 obo:FOODON_03412574)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_49170 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_49170 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_49170 "Rhododendron tomentosum"@en)
SubClassOf(obo:NCBITaxon_49170 obo:OBI_0100026)

# Class: obo:NCBITaxon_492024 (Alepocephalus australis)

Expand Down Expand Up @@ -88439,6 +88425,7 @@ SubClassOf(obo:NCBITaxon_56993 obo:FOODON_03414684)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_57006 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_57006 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_57006 "Sambucus nigra subsp. caerulea"@en)
SubClassOf(obo:NCBITaxon_57006 obo:OBI_0100026)

# Class: obo:NCBITaxon_571675 (Kunzea pomifera)

Expand Down Expand Up @@ -90229,6 +90216,7 @@ SubClassOf(obo:NCBITaxon_6610 obo:FOODON_03411644)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_661104 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_661104 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_661104 "Morchella tomentosa"@en)
SubClassOf(obo:NCBITaxon_661104 obo:OBI_0100026)

# Class: obo:NCBITaxon_661134 (Sphyrna tudes)

Expand All @@ -90250,6 +90238,7 @@ SubClassOf(obo:NCBITaxon_661134 obo:FOODON_03412598)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_661339 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_661339 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_661339 "Aronia melanocarpa"@en)
SubClassOf(obo:NCBITaxon_661339 obo:OBI_0100026)

# Class: obo:NCBITaxon_662062 (Paratrachichthys trailli)

Expand Down Expand Up @@ -90992,6 +90981,7 @@ SubClassOf(obo:NCBITaxon_690869 obo:FOODON_03414130)
# Class: obo:NCBITaxon_69108 (Adansonia)

AnnotationAssertion(rdfs:label obo:NCBITaxon_69108 "Adansonia"@en)
SubClassOf(obo:NCBITaxon_69108 obo:OBI_0100026)

# Class: obo:NCBITaxon_69109 (Adansonia digitata)

Expand Down Expand Up @@ -91124,6 +91114,11 @@ AnnotationAssertion(go:hasSynonym obo:NCBITaxon_69944 "lota lota"@en)
AnnotationAssertion(go:hasSynonym obo:NCBITaxon_69944 "lota maculosa"@en)
SubClassOf(obo:NCBITaxon_69944 obo:FOODON_03411835)

# Class: obo:NCBITaxon_6997 (Acheta domesticus)

AnnotationAssertion(rdfs:label obo:NCBITaxon_6997 "Acheta domesticus"@en)
SubClassOf(obo:NCBITaxon_6997 obo:OBI_0100026)

# Class: obo:NCBITaxon_700652 (Mugil trichodon)

AnnotationAssertion(obo:IAO_0000114 obo:NCBITaxon_700652 obo:IAO_0000428)
Expand Down Expand Up @@ -91227,6 +91222,11 @@ AnnotationAssertion(go:hasNarrowSynonym obo:NCBITaxon_70446 "Rastrelliger kanagu
AnnotationAssertion(go:hasSynonym obo:NCBITaxon_70446 "rastrelliger kanagurta"@en)
SubClassOf(obo:NCBITaxon_70446 obo:FOODON_03413974)

# Class: obo:NCBITaxon_70906 (Grylloidea)

AnnotationAssertion(rdfs:label obo:NCBITaxon_70906 "Grylloidea"@en)
SubClassOf(obo:NCBITaxon_70906 obo:OBI_0100026)

# Class: obo:NCBITaxon_7091 (Bombyx mori)

AnnotationAssertion(obo:IAO_0000114 obo:NCBITaxon_7091 obo:IAO_0000428)
Expand Down Expand Up @@ -96252,6 +96252,7 @@ SubClassOf(obo:NCBITaxon_984867 obo:FOODON_03413359)
AnnotationAssertion(dcterms:contributor obo:NCBITaxon_98504 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(dcterms:date obo:NCBITaxon_98504 "2024-03-23T03:09:40Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:NCBITaxon_98504 "Matricaria chamomilla"@en)
SubClassOf(obo:NCBITaxon_98504 obo:OBI_0100026)

# Class: obo:NCBITaxon_9852 (Alces alces)

Expand Down Expand Up @@ -97166,6 +97167,7 @@ SubClassOf(obo:UO_0000000 obo:IAO_0000028)
# Class: <http://purl.obolibrary.org/obo/NCBITaxon:4281> (Cornus)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/NCBITaxon:4281> "Cornus"@en)
SubClassOf(<http://purl.obolibrary.org/obo/NCBITaxon:4281> obo:OBI_0100026)

# Class: <https://www.w3.org/TR/owl-time/#time:Duration> (Duration)

Expand Down Expand Up @@ -97282,6 +97284,7 @@ AnnotationAssertion(rdfs:comment obo:FOODON_00002341 "SIREN DB annotation:
* preservation by freezing FOODON:03470136
* ingredient: http://purl.obolibrary.org/obo/FOODON_03460147"@en)
AnnotationAssertion(go:hasDbXref obo:FOODON_02020219 siren:F10168)
AnnotationAssertion(go:hasDbXref obo:FOODON_02020900 siren:F9737)
AnnotationAssertion(go:hasDbXref obo:FOODON_02021446 <http://eol.org/pages/2604866>)
AnnotationAssertion(go:hasDbXref obo:FOODON_02021446 langual:B1335)
AnnotationAssertion(go:hasDbXref obo:FOODON_02021525 <http://eol.org/pages/1644>)
Expand Down

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