Removing LanguaL import annotations since these are covered by hasDbX…

…ref to langual codes As well simplified a number of hasDbXref langual cross-references As well solved a Capsicum annum / poblano pepper circular hierarchy issue
FoodOntology · Jun 27, 2024 · 6e58240 · 6e58240
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Showing 6 changed files with 6,233 additions and 24,869 deletions.
diff --git a/src/ontology/foodon-edit.ofn b/src/ontology/foodon-edit.ofn
diff --git a/src/ontology/imports/animal/animal_parts.ofn b/src/ontology/imports/animal/animal_parts.ofn
@@ -2787,6 +2787,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9791>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9793>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9796>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9823>))
+Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9825>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9832>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9850>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9852>))
@@ -27179,7 +27180,7 @@ AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibra
 AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/FOODON_02021651> "2024-02-12T14:11:19Z"^^xsd:dateTime)
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FOODON_02021651> "A pig which is dead or alive and has a relatively intact body."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOODON_02021651> "pig"@en)
-EquivalentClasses(<http://purl.obolibrary.org/obo/FOODON_02021651> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/FOODON_03411136> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_9823>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/FOODON_02021651> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/FOODON_03411136> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002162> <http://purl.obolibrary.org/obo/NCBITaxon_9825>)))
 SubClassOf(<http://purl.obolibrary.org/obo/FOODON_02021651> <http://purl.obolibrary.org/obo/FOODON_03411136>)
 
 # Class: <http://purl.obolibrary.org/obo/FOODON_02021652> (live pig)

diff --git a/src/ontology/imports/animal/resources/species_list.tsv b/src/ontology/imports/animal/resources/species_list.tsv
@@ -54,7 +54,7 @@ TRUE	mammal	nutria		Myocastor coypus	NCBITaxon:10157	Rodentia
 TRUE	cephalopod	octopus		Octopus	FOODON:03411514	Cephalopoda		NCBI also has 'Octopus' with a broad synonym 'octopus'.	USDA		v2024-03-26
 TRUE	ratite	ostrich		Struthio camelus	NCBITaxon:8801	Aves			USDA		
 TRUE	avian animal	pheasant		Phasianus	NCBITaxon:9053	Aves		FoodOn also has a term 'pheasant', should we deprecate that?	USDA		
-TRUE	swine	pig	pork	Sus scrofa domesticus	NCBITaxon:9823	Suina			USDA		
+TRUE	swine	pig	pork	Sus scrofa domesticus	NCBITaxon:9825	Suina			USDA		
 TRUE	avian animal	pigeon		Columbidae	NCBITaxon:8930	Aves		FoodOn has a term 'pigeon'.	USDA		
 TRUE	porpoise family	porpoise		porpoise family	FOODON:03413364	Cetacea					
 TRUE	avian animal	poultry		poultry	FOODON:00004298	Aves