Frbhosts template

frb/builds/build_hosts.py

@@ -295,6 +295,7 @@ def run(host_input:pandas.core.series.Series,
             continue
         # Load table
         sub_tbl = read_lit_table(lit_entry, coord=Host.coord)
+        #embed(header='Check the table 298')
         if sub_tbl is not None:
             # Add References, unless the value is masked
             for key in sub_tbl.keys():
@@ -446,6 +447,7 @@ def run(host_input:pandas.core.series.Series,
                 project_list, ref_list, '_galight.json',
                 prefix=file_root+'_'+host_input.Galfit_filter)
             if not found_galfit:
+                embed(header='Check 450')
                 raise IOError(f"Galfit file with filter {host_input.Galfit_filter} not found!")
         print(f"Galfit analysis slurped in via: {galfit_file}")
         Host.parse_galfit(galfit_file)
@@ -486,6 +488,18 @@ def run(host_input:pandas.core.series.Series,
                         hikey = key.replace('lo', 'up')
                         Host.derived[hikey] = float(lit_tbl[hikey].data[0])
 
+    # Add PATH
+    hosts_file = importlib_resources.files('frb.data.Galaxies')/'public_hosts.csv'
+    hosts_df = pandas.read_csv(hosts_file, index_col=False)
+
+    indx = file_root == 'HG'+hosts_df.FRB.values
+    if np.any(indx):
+        # Get the row
+        host_row = hosts_df.loc[indx].iloc[0]
+        # Set P_Ox
+        Host.path['P_Ox'] = host_row.P_Ox
+        # Reference would go here
+
     # Vet all
     assert Host.vet_all()
 

frb/builds/build_path.py

@@ -1,4 +1,4 @@
-""" Top-level module to build or re-build the JSON files for
+""" Top-level module to run PATH analysis on a list of
 FRB host galaxies"""
 
 from importlib.resources import files
@@ -8,14 +8,16 @@
 
 from astropy.coordinates import SkyCoord
 
-from astropath.priors import load_std_priors
+try:
+    from astropath.priors import load_std_priors
+except ModuleNotFoundError:
+    print("astropath not installed; install it to builld PATH")
+else:
+    from frb.associate import frbassociate
+    from frb.associate import frbs
 
 from frb.frb import FRB
-
-from frb.associate import frbassociate
-from frb.associate import frbs
 from frb.galaxies import hosts
-
 from frb import utils
 
 from IPython import embed
@@ -143,6 +145,7 @@ def main(options:str=None, frb:str=None):
     Args:
         options (str, optional): [description]. Defaults to None.
         frb (str, optional): FRB name
+            If None, will read the public host table and run on those
     """
     # Read public host table
     if frb is None:
@@ -154,10 +157,6 @@ def main(options:str=None, frb:str=None):
     else:
         # Generate the list
         frb_list = frb.split(',')
-        #ifrb = [FRB.by_name(ifrb) for ifrb in frbs]
-        #host = ifrb.grab_host()
-        #frb_list = [ifrb.frb_name]
-        #host_coords = [host.coord]
 
     # Load prior
     priors = load_std_priors()

frb/builds/build_specdb.py

@@ -14,9 +14,13 @@
 from astropy import units
 from astropy.table import Table, vstack
 
-from specdb import defs
-from specdb.build import privatedb as pbuild
-from specdb.build import utils as spbu
+try:
+    from specdb import defs
+except (ImportError, ModuleNotFoundError):
+    print("No specdb module found, please install specdb if you wish to build specdb")
+else:
+    from specdb.build import privatedb as pbuild
+    from specdb.build import utils as spbu
 
 from frb.surveys import sdss
 

frb/data/FRBs/FRB20171020A.json

@@ -0,0 +1,30 @@
+{
+    "DM": {
+        "unit": "pc / cm3",
+        "value": 114.1
+    },
+    "DMISM": {
+        "unit": "pc / cm3",
+        "value": 37.46616994198802
+    },
+    "DM_err": {
+        "unit": "pc / cm3",
+        "value": 0.2
+    },
+    "FRB": "FRB20171020A",
+    "cosmo": "Planck18",
+    "dec": -19.66978611,
+    "eellipse": {
+        "a": 600.0,
+        "b": 600.0,
+        "cl": 68.0,
+        "theta": 0.0
+    },
+    "ra": 333.8272917,
+    "refs": [
+        "Shannon2018",
+        "Mahony2018"
+    ],
+    "repeater": false,
+    "z": 0.00867
+}

frb/data/FRBs/FRB20240117A.json

@@ -0,0 +1,24 @@
+{
+    "DM": {
+        "unit": "pc / cm3",
+        "value": 880.0
+    },
+    "DMISM": {
+        "unit": "pc / cm3",
+        "value": 30.84008909618122
+    },
+    "FRB": "FRB20240117A",
+    "cosmo": "Planck18",
+    "dec": -15.85249361,
+    "eellipse": {
+        "a": 0.697,
+        "b": 0.472,
+        "cl": 68.0,
+        "theta": 0.0
+    },
+    "ra": 3.59186806,
+    "refs": [
+        "Muller25"
+    ],
+    "repeater": false
+}

frb/data/Galaxies/20121102A/FRB20121102A_host.json

@@ -4,7 +4,7 @@
     "dec": 33.14789805555556,
     "dec_FRB": 33.14793156,
     "derived": {
-        "AV_nebular": -0.14987551477721286,
+        "AV_nebular": -0.16167399704951668,
         "AV_old": 0.11,
         "AV_old_loerr": 0.06,
         "AV_old_ref": "Gordon2023",
@@ -43,7 +43,7 @@
         "SFR_SED_loerr": 0.01,
         "SFR_SED_ref": "Gordon2023",
         "SFR_SED_uperr": 0.02,
-        "SFR_nebular": 0.13176802257889894,
+        "SFR_nebular": 0.13030556188049094,
         "SFR_photom": 0.002035787096368971,
         "SFR_photom_err": 0.005813702135185201,
         "SMStar": 13035903.263379255,
@@ -128,64 +128,67 @@
         "[OIII] 5007_ref": "Tendulkar2017"
     },
     "offsets": {
-        "ang_avg": 0.22739060490950594,
-        "ang_avg_err": 0.015495695605799073,
-        "ang_best": 0.22687098663780167,
-        "ang_best_err": 0.015504405356409817,
-        "physical": 0.7510479525383023,
-        "physical_err": 0.05132675654488136
+        "ang_avg": 0.22739060492236665,
+        "ang_avg_err": 0.015495695605786343,
+        "ang_best": 0.2268709866506913,
+        "ang_best_err": 0.015504405356396151,
+        "physical": 0.7510479525809729,
+        "physical_err": 0.05132675654483613
+    },
+    "path": {
+        "P_Ox": 1.0
     },
     "photom": {
         "EBV": 0.6798,
-        "GMOS_N_g": 23.329214463965435,
+        "GMOS_N_g": 23.37173941487555,
         "GMOS_N_g_err": 0.12,
-        "GMOS_N_g_flux": 0.0016916643951493313,
-        "GMOS_N_g_flux_err": 0.00019769339537188934,
+        "GMOS_N_g_flux": 0.0016266878705262977,
+        "GMOS_N_g_flux_err": 0.0001797881875981479,
         "GMOS_N_g_ref": "Bassa2017",
-        "GMOS_N_i": 23.538006459003054,
+        "GMOS_N_i": 23.470412432617216,
         "GMOS_N_i_err": 0.09,
-        "GMOS_N_i_flux": 0.0013957171362773684,
-        "GMOS_N_i_flux_err": 0.00012062572389579638,
+        "GMOS_N_i_flux": 0.0014853712757988892,
+        "GMOS_N_i_flux_err": 0.0001231269752597785,
         "GMOS_N_i_ref": "Bassa2017",
-        "GMOS_N_r": 23.730606922036774,
+        "GMOS_N_r": 23.709083581668537,
         "GMOS_N_r_err": 0.14,
-        "GMOS_N_r_flux": 0.0011688458130394571,
-        "GMOS_N_r_flux_err": 0.0001608650767947018,
+        "GMOS_N_r_flux": 0.0011922478875840414,
+        "GMOS_N_r_flux_err": 0.00015373412393386067,
         "GMOS_N_r_ref": "Bassa2017",
-        "GMOS_N_z": 23.4892120964504,
+        "GMOS_N_z": 23.4253450166459,
         "GMOS_N_z_err": 0.13,
-        "GMOS_N_z_flux": 0.0014598732663756548,
-        "GMOS_N_z_flux_err": 0.0001856921658216167,
+        "GMOS_N_z_flux": 0.0015483245060917746,
+        "GMOS_N_z_flux_err": 0.00018538774419590303,
         "GMOS_N_z_ref": "Bassa2017",
-        "MMIRS_J": 23.508388643967457,
+        "MMIRS_J": 23.457063524590936,
         "MMIRS_J_err": 0.5085084168,
-        "MMIRS_J_flux": 0.0014343149882309072,
-        "MMIRS_J_flux_err": 0.000856805365110051,
+        "MMIRS_J_flux": 0.001503746343972243,
+        "MMIRS_J_flux_err": 0.0007042849536480726,
         "MMIRS_J_ref": "Gordon2023",
-        "MMIRS_K": 23.733094608431887,
+        "MMIRS_K": 23.696543121968844,
         "MMIRS_K_err": 0.5892336803,
-        "MMIRS_K_flux": 0.0011661707680265037,
-        "MMIRS_K_flux_err": 0.0008404052761181673,
+        "MMIRS_K_flux": 0.0012060984115958677,
+        "MMIRS_K_flux_err": 0.000654554764549769,
         "MMIRS_K_ref": "Gordon2023",
-        "Spitzer_3.6": 23.79419590236575,
+        "Spitzer_3.6": 23.775211690225486,
         "Spitzer_3.6_err": 0.20028143582916946,
-        "Spitzer_3.6_flux": 0.0011023553986591553,
-        "Spitzer_3.6_flux_err": 0.00022331087550180273,
+        "Spitzer_3.6_flux": 0.0011217996965718052,
+        "Spitzer_3.6_flux_err": 0.00020693392461033295,
         "Spitzer_3.6_ref": "Bassa2017",
-        "Spitzer_4.5": 24.717447113669405,
+        "Spitzer_4.5": 24.70006282754616,
         "Spitzer_4.5_err": 999.0,
-        "Spitzer_4.5_flux": 0.00047100026212537106,
+        "Spitzer_4.5_flux": 0.0004786023902795443,
         "Spitzer_4.5_flux_err": -99.0,
         "Spitzer_4.5_ref": "Bassa2017",
-        "WFC3_F110W": 23.081347094514243,
+        "WFC3_F110W": 23.02755754490239,
         "WFC3_F110W_err": 0.012,
-        "WFC3_F110W_flux": 0.002125500230932293,
-        "WFC3_F110W_flux_err": 2.3622197326669726e-05,
+        "WFC3_F110W_flux": 0.002233453815479198,
+        "WFC3_F110W_flux_err": 2.4685043814782763e-05,
         "WFC3_F110W_ref": "Bassa2017",
-        "WFC3_F160W": 22.962270841633313,
+        "WFC3_F160W": 22.91542642756748,
         "WFC3_F160W_err": 0.03,
-        "WFC3_F160W_flux": 0.0023718742357549238,
-        "WFC3_F160W_flux_err": 6.645113570741157e-05,
+        "WFC3_F160W_flux": 0.0024764491979752637,
+        "WFC3_F160W_flux_err": 6.842682008177884e-05,
         "WFC3_F160W_ref": "Bassa2017"
     },
     "positional_error": {

frb/data/Galaxies/20171020/FRB20171020_host.json → frb/data/Galaxies/20171020A/FRB20171020A_host.json

@@ -1,8 +1,8 @@
 {
-    "FRB": "FRB20171020",
+    "FRB": "FRB20171020A",
     "cosmo": "Planck18",
     "dec": -19.586,
-    "dec_FRB": -19.66978611111111,
+    "dec_FRB": -19.66978611,
     "derived": {
         "M_r": -17.9,
         "M_r_err": 0.1,
@@ -15,15 +15,18 @@
         "SFR_nebular_ref": "Mahony2018"
     },
     "offsets": {
-        "ang_avg": 802.3114040934199,
-        "ang_avg_err": 417.47553833878595,
-        "ang_best": 313.04950185295974,
-        "ang_best_err": 643.1664124433216,
-        "physical": 57.68533434653865,
-        "physical_err": 118.5156638891039
+        "ang_avg": 802.3113933098031,
+        "ang_avg_err": 417.4755334899458,
+        "ang_best": 313.04946774943465,
+        "ang_best_err": 643.1664270356115,
+        "physical": 57.685328062314476,
+        "physical_err": 118.51566657801129
+    },
+    "path": {
+        "P_Ox": 0.0
     },
     "ra": 333.8519999999999,
-    "ra_FRB": 333.8272916666666,
+    "ra_FRB": 333.8272917,
     "redshift": {
         "z": 0.00867,
         "z_FRB": 0.00867,

frb/data/Galaxies/20230203A/FRB20230203A_host.json

@@ -85,8 +85,8 @@
     "ra": 151.66383333333332,
     "ra_FRB": 151.661594,
     "redshift": {
-        "z": "0.1464",
-        "z_FRB": "0.1464",
-        "z_spec": "0.1464"
+        "z": 0.1464,
+        "z_FRB": 0.1464,
+        "z_spec": 0.1464
     }
 }

frb/data/Galaxies/20230222A/FRB20230222A_host.json

@@ -53,8 +53,8 @@
     "ra": 106.96049999999997,
     "ra_FRB": 106.960358,
     "redshift": {
-        "z": "0.1223",
-        "z_FRB": "0.1223",
-        "z_spec": "0.1223"
+        "z": 0.1223,
+        "z_FRB": 0.1223,
+        "z_spec": 0.1223
     }
 }

frb/data/Galaxies/20230222B/FRB20230222B_host.json

@@ -101,8 +101,8 @@
     "ra": 238.73795833333332,
     "ra_FRB": 238.739123,
     "redshift": {
-        "z": "0.11",
-        "z_FRB": "0.11",
-        "z_spec": "0.11"
+        "z": 0.11,
+        "z_FRB": 0.11,
+        "z_spec": 0.11
     }
 }

frb/data/Galaxies/20230311A/FRB20230311A_host.json

@@ -65,8 +65,8 @@
     "ra": 91.11045833333331,
     "ra_FRB": 91.109662,
     "redshift": {
-        "z": "0.1918",
-        "z_FRB": "0.1918",
-        "z_spec": "0.1918"
+        "z": 0.1918,
+        "z_FRB": 0.1918,
+        "z_spec": 0.1918
     }
 }

frb/data/Galaxies/20230703A/FRB20230703A_host.json

@@ -85,8 +85,8 @@
     "ra": 184.62279166666667,
     "ra_FRB": 184.624449,
     "redshift": {
-        "z": "0.1184",
-        "z_FRB": "0.1184",
-        "z_spec": "0.1184"
+        "z": 0.1184,
+        "z_FRB": 0.1184,
+        "z_spec": 0.1184
     }
 }

frb/data/Galaxies/20230730A/FRB20230730A_host.json

@@ -29,8 +29,8 @@
     "ra": 54.66491666666666,
     "ra_FRB": 54.664564,
     "redshift": {
-        "z": "0.2115",
-        "z_FRB": "0.2115",
-        "z_spec": "0.2115"
+        "z": 0.2115,
+        "z_FRB": 0.2115,
+        "z_spec": 0.2115
     }
 }