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FNNDSC / ChRIS_ultron_backEnd Public

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Nicolas Rannou edited this page Jun 23, 2016 · 6 revisions

Welcome to the ChRIS_ultron_backEnd wiki!

Vagrant Setup on OSX

Toggle table of contents Pages 39

Home
0. ChRIS preliminary workflow: intro
1.1 ChRIS FS plugin workflow: upload files to CUBE and create a new top level feed (pl dircopy)
1.2 ChRIS FS plugin workflow: upload files to CUBE and create a new top level feed (pl pacscopy)
2.1 ChRIS DS plugin workflow: anonymize DICOM images.
2.2 ChRIS DS plugin workflow: convert DICOM to jpg and invert image intensities.
2.3 ChRIS DS plugin workflow: extract DICOM metadata.
2.4 ChRIS FS DS DS plugin worflow: simulate a FreeSurfer MPC heatmap workflow
2.4.1 ChRIS FS DS DS plugin worflow summary
2.4.2 ChRIS FS DS DS plugin worflow summary [moc]
3. ChRIS plugin PACS query workflow
4. ChRIS plugin PACS retrieve workflow
5. ChRIS plugin geretrieve
6. ChRIS workflow: run prostate imaging segmenter
[HOW TO] Create a new ChRIS user account through the ChRIS API
[HOW TO] Register a compute resource via the REST API
[HOW TO] Register a plugin via Django dashboard
[HOW TO] Register a plugin via the REST API
Admin workflow
ChRIS backend database design
ChRIS backend production services secret configuration files
ChRIS REST API design
ChRIS REST API Reference
Chris workflow
CUBE Development directly on the metal
Debugging
Debugging CUBE Containerized Services
Debugging CUBE pacsquery and pacsretrieve without containers
Debugging CUBE Services without Containers
Deployment
FastSurfer Workflow
Fedora 32 Support for Docker
MICCAI Work Flow (WIP)
PACS Pull Details
PACS Pull wokflow
Prune orphaned plugin instance files
Storage Backends
Vagrant Setup OSX
Workflow notes

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