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fix ReFrame issues on NVIDIA Grace #988

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fix ReFrame issues on NVIDIA Grace #988

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@trz42 trz42 commented Mar 28, 2025 •
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Let's see if CI for eessi_container.sh is fixed by installing another package in install_apptainer_ubuntu.sh, and also if ReFrame tests succeed.

We should also add some package to be built to test if building still works after running containers with the additional argument --contain.

truib added 2 commits March 28, 2025 22:19
@truib
run container more isolated from host

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install package needed since apptainer 1.4.0
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@trz42 trz42 added bug Something isn't working tests Related to software testing 2023.06-software.eessi.io 2023.06 version of software.eessi.io labels Mar 28, 2025
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eessi-bot bot commented Mar 28, 2025

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

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eessi-bot bot commented Mar 28, 2025

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

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Instance trz42-GH200-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

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Instance rt-Grace-jr is configured to build for:

  • architectures: aarch64/nvidia/grace
  • repositories: eessi.io-2023.06-software

@trz42 trz42 changed the title fix CI and ReFrame issues on NVIDIA Grace fix ReFrame issues on NVIDIA Grace Mar 28, 2025
@truib
{2023.06}[2023b,grace] BWA v0.7.18
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trz42 commented Mar 28, 2025

bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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Updates by the bot instance trz42-GH200-jr (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

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eessi-bot-trz42 bot commented Mar 28, 2025 •
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New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545111

date job status comment
Mar 28 22:10:42 UTC 2025 submitted job id 13545111 awaits release by job manager
Mar 28 22:10:50 UTC 2025 released job awaits launch by Slurm scheduler
Mar 28 22:11:53 UTC 2025 running job 13545111 is running
Mar 28 22:42:45 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-13545111.out
❌ found message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Mar 28 22:42:45 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13545111.test does not exist in job directory, or parsing it failed.

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trz42 commented Mar 28, 2025

Rebuild...
bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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Updates by the bot instance rt-Grace-jr (click for details)
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eessi-bot-trz42 bot commented Mar 28, 2025 •
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Updates by the bot instance trz42-GH200-jr (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

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eessi-bot-trz42 bot commented Mar 28, 2025 •
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New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545157

date job status comment
Mar 28 22:42:45 UTC 2025 submitted job id 13545157 awaits release by job manager
Mar 28 22:43:49 UTC 2025 released job awaits launch by Slurm scheduler
Mar 28 22:44:52 UTC 2025 running job 13545157 is running
Mar 28 23:14:38 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-13545157.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-nvidia-grace-1743202985.tar.gzsize: 0 MiB (426755 bytes)
entries: 52
modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all
BWA/0.7.18-GCCcore-13.2.0.lua
software under 2023.06/software/linux/aarch64/nvidia/grace/software
BWA/0.7.18-GCCcore-13.2.0
other under 2023.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Mar 28 23:14:38 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13545157.test does not exist in job directory, or parsing it failed.

truib added 2 commits March 29, 2025 00:13
@truib
add /dev to extra bind paths
df59ac9
@truib
Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…
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fed90b8 
…-layer into fix_CI_and_reframe_issues_on_grace
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trz42 commented Mar 28, 2025

Rebuild after adding /dev to extra bind paths...
bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

    • no jobs were submitted

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eessi-bot-trz42 bot commented Mar 28, 2025 •
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Updates by the bot instance trz42-GH200-jr (click for details)

  • received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace from trz42

    • expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace

  • handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace resulted in:

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eessi-bot-trz42 bot commented Mar 28, 2025 •
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New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.03/pr_988/13545169

date job status comment
Mar 28 23:16:59 UTC 2025 submitted job id 13545169 awaits release by job manager
Mar 28 23:17:42 UTC 2025 released job awaits launch by Slurm scheduler
Mar 28 23:18:46 UTC 2025 running job 13545169 is running
Mar 28 23:56:45 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-13545169.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-nvidia-grace-1743204932.tar.gzsize: 0 MiB (428313 bytes)
entries: 52
modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all
BWA/0.7.18-GCCcore-13.2.0.lua
software under 2023.06/software/linux/aarch64/nvidia/grace/software
BWA/0.7.18-GCCcore-13.2.0
other under 2023.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Mar 28 23:56:45 UTC 2025 test result
🤷 UNKNOWN (click triangle for detailed information)
  • Job test file _bot_job13545169.test does not exist in job directory, or parsing it failed.

@truib
Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…
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1a98901 
…-layer into fix_CI_and_reframe_issues_on_grace
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