Allow `cutoff` predictions, support empty background pixels and tests#29

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andsild wants to merge 23 commits intoDigitalSlideArchive:mainfrom

andsild:aza4423-AL-big

Commits on Jun 4, 2025

Adjust pixelmap tiff filename

cooperlab
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Adjust h5 filename

cooperlab
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remove obsolete import

cooperlab
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replace f string

cooperlab
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match complex feature.h5 files

cooperlab
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fallback to hash-based h5 naming

cooperlab
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use feature file list

cooperlab
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Add weights_only(false) to torch.load
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Add try-catch to model load
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Support `cutoff` predictions for AL
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Add missing import
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Fix spelling
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Ignore any temporary files (generated during training in git
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Bugfix: use global index, not batch index, for bounding boxes
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Make device optional parameter
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Add simple tests for features, training, pred
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Make girder client a parameter
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Remove unused parameter
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Add print statements for tracking
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Make using CUDA an optional parameter
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Add benchmark for model training
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Add simple script to inspect feature files
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Allow a `background` pixel of `[0,0,1,1]` to be defined, and if it
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