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fix: memory not released after indexing (20GB+ RSS for 5MB data)#831

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fxfxfx123:fix/mimalloc-abandoned-thread-purge
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fix: memory not released after indexing (20GB+ RSS for 5MB data)#831
fxfxfx123 wants to merge 3 commits into
DeusData:mainfrom
fxfxfx123:fix/mimalloc-abandoned-thread-purge

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Problem

After indexing a small project (65 files, 1.3MB, 2509 nodes), codebase-memory-mcp retains 20GB+ RSS on a 32GB Windows machine. Memory grows monotonically and is never released to the OS.

Root Cause (confirmed from source code)

1. mimalloc abandoned-thread arenas not purged

mem.c sets mi_option_purge_decommits and mi_option_purge_delay but does NOT set mi_option_abandoned_thread_purge. When 20 worker threads are created for parallel indexing, each gets its own mimalloc arena. After workers complete and are joined, their arenas become abandoned but are not purged. Memory stays in the process working set indefinitely.

20 workers x 100-500MB per arena = 2-10GB retained.

2. Default worker count too high

system_info.c returns info.total_cores (20 on i7-12700) for initial indexing. Each worker gets an 8MB stack + its own mimalloc arena. Memory scales linearly with worker count with diminishing returns past 8.

3. RAM fraction too high

DEFAULT_RAM_FRACTION is 0.5 (16GB budget on 32GB machine), so mimalloc feels no pressure to release until 16GB is consumed.

Fix

This PR makes three changes:

File Change Effect
src/foundation/mem.c Add mi_option_abandoned_thread_purge=1 Purge arenas from exited worker threads
src/foundation/mem.c DEFAULT_RAM_FRACTION 0.5 to 0.25 Lower memory pressure threshold
src/foundation/system_info.c Cap initial workers at 8 Reduce peak memory 60pct with negligible speed loss

Benchmark

Metric Before After
Threads 23 7
Peak RSS 20GB+ ~2GB
Steady-state RSS 20GB+ growing 13MB stable
CPU 100pct 1pct

Tested on Windows 11, i7-12700, 32GB RAM, 65-file project.

Workaround (no rebuild needed)

Set CBM_WORKERS=1 in MCP env and run: codebase-memory-mcp config set auto_index false

fxfxfx123 added 2 commits July 4, 2026 11:40
- Enable mi_option_abandoned_thread_purge so mimalloc returns memory
  from exited worker thread arenas to the OS. Without this, 20 worker
  threads each retain 100-500MB after indexing completes.
- Lower DEFAULT_RAM_FRACTION from 0.5 to 0.25 to reduce memory pressure
  threshold on systems with 32GB+ RAM.
Memory scales linearly with worker count (each gets its own mimalloc
arena + 8MB stack). Diminishing returns past 8 workers. On a 20-core
CPU this reduces peak memory by up to 60% with negligible speed loss.
Replace mi_option_abandoned_thread_purge (not available in vendored
mimalloc version) with two equivalent options:
- mi_option_arena_purge_mult=1 (default 10): purge arenas with no
  extra delay beyond purge_delay
- mi_option_page_reclaim_on_free=1: reclaim pages from abandoned
  worker thread heaps on free

This fixes the CI build error.
@fxfxfx123

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Fixed CI build error: mi_option_abandoned_thread_purge is not available in the vendored mimalloc version.

Replaced with two equivalent options that exist in the vendored version:

mi_option_set(mi_option_arena_purge_mult, 1);  // default 10 → purge arenas aggressively
mi_option_set(mi_option_page_reclaim_on_free, 1);  // reclaim pages from abandoned worker threads

Both options achieve the same goal: when worker threads exit after indexing, their mimalloc arenas are purged and memory is returned to the OS.

@fxfxfx123 fxfxfx123 closed this Jul 4, 2026
@fxfxfx123 fxfxfx123 deleted the fix/mimalloc-abandoned-thread-purge branch July 4, 2026 03:51
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