daycli.yaml

bin/init_daycli

@@ -43,7 +43,8 @@ if conda env list | grep -q "^DAYCLI "; then
     echo "Conda environment 'DAYCLI' already exists."
 else
     echo "Creating 'DAYCLI' environment."
-    conda create -y -n DAYCLI -c conda-forge python parallel jq nodejs==18.15.0 aws-parallelcluster==3.11.1 flask=2.2.5 pyyaml
+    conda create -y -n DAYCLI -f config/daycli/DAYCLI.yaml
+    #conda create -y -n DAYCLI -c conda-forge python parallel jq nodejs==18.15.0 aws-parallelcluster==3.11.1 flask=2.2.5 pyyaml
 fi
 echo "Activating 'DAYCLI' environment."
 conda activate DAYCLI

config/daycli/DAYCLI.yaml

@@ -0,0 +1,12 @@
+---
+channels:
+  - conda-forge
+dependencies:
+  - python 
+  - ipython
+  - parallel 
+  - jq 
+  - nodejs==18.15.0 
+  - aws-parallelcluster==3.11.1 
+  - flask=2.2.5 
+  - pyyaml

etc/init_day_bio.sh

@@ -0,0 +1,53 @@
+
+
+sudo adduser --uid 1002 --disabled-password --gecos "" daylily || echo "daylily user add failed"
+
+sudo apt update -y
+
+sudo apt install -y tmux emacs rclone parallel atop htop glances fd-find docker.io   build-essential libssl-dev uuid-dev libgpgme-dev squashfs-tools   libseccomp-dev pkg-config openjdk-11-jdk wget unzip nasm yasm  fuse2fs gocryptfs  golang-go
+
+
+sudo add-apt-repository -y ppa:apptainer/ppa
+
+# Update package lists
+sudp apt update
+
+# Install Apptainer
+sudo apt install -y apptainer
+
+
+
+
+ssh-keygen
+
+head ~/.ssh/id_rsa.pub
+
+
+
+#curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"
+curl "https://awscli.amazonaws.com/awscli-exe-linux-aarch64.zip" -o "awscliv2.zip"
+
+unzip awscliv2.zip
+sudo ./aws/install
+aws --version
+
+
+
+MACHINE="linux_arm"
+
+echo "Autoinstalling Miniconda for Linux ARM..."
+wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-aarch64.sh -O Miniconda3-Linux-aarch64.sh
+chmod +x Miniconda3-Linux-aarch64.sh
+./Miniconda3-Linux-aarch64.sh -b -p ~/miniconda3
+rm Miniconda3-Linux-aarch64.sh
+~/miniconda3/bin/conda init $SHELL
+
+$SHELL
+
+mkdir ~/projects
+
+cd ~/projects
+
+git clone 
+
+