CLIF-SRTR Record Linkage

Objective

Fuzzy match CLIF patient records with SRTR (Scientific Registry of Transplant Recipients) organ donor records using a deterministic hierarchical matching algorithm.

Setup

1. Install Dependencies

Using uv (recommended):

uv sync

3. Configure Your Site

cp config/config_template.json config/config.json

Edit with your paths:

{
  "site_name": "YOUR_SITE",
  "tables_path": "/path/to/clif/tables",
  "file_type": "parquet",
  "timezone": "America/Chicago",
  "project_root": "/path/to/this/repo"
}

Run

1. Generate Matches

Run notebooks- 01, 02 and 03 in record_linkage directory.

3. View Results

uv run streamlit run donor_patient_viewer.py

Access at: http://localhost:8503