Add encode-toolkit to bioinformatics category

[ammawla]

Summary

Adds encode-toolkit — the first bioinformatics/genomics plugin for Claude Code.

• 20 MCP tools for searching, downloading, and tracking ENCODE Project data
• 47 expert skills covering analysis workflows, pipeline execution, and external database integration
• 14 database integrations: ENCODE, PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, JASPAR, gnomAD, Ensembl, UCSC, GEO, CELLxGENE
• 7 Nextflow pipelines: ChIP-seq, ATAC-seq, RNA-seq, WGBS, Hi-C, DNase-seq, CUT&RUN

Creates a new bioinformatics category (alphabetically between blockchain and btp) and adds it to the Table of Contents.

Install: claude mcp add encode -- uvx encode-toolkit

Registries: PyPI | npm | Glama

DOI: 10.5281/zenodo.18917511

License: CC-BY-NC-ND-4.0