drop support for python 3.6

.github/workflows/s2i-build.yml

@@ -18,9 +18,9 @@ jobs:
 
     - name: Install requirements
       run: |
-        wget https://github.com/openshift/source-to-image/releases/download/v1.2.0/source-to-image-v1.2.0-2a579ecd-linux-amd64.tar.gz
-        tar -xvf source-to-image-v1.2.0-2a579ecd-linux-amd64.tar.gz
+        wget https://github.com/openshift/source-to-image/releases/download/v1.3.1/source-to-image-v1.3.1-a5a77147-linux-amd64.tar.gz
+        tar -xvf source-to-image-v1.3.1-a5a77147-linux-amd64.tar.gz
         sudo cp s2i /usr/local/bin
     - name: Build image
       run:  |
-        s2i build . centos/python-36-centos7 cscfi/beacon-python
+        s2i build . centos/python-38-centos7 cscfi/beacon-python

README.md

@@ -10,7 +10,7 @@ Documentation: https://beacon-python.readthedocs.io
 ### Quick start
 
 `beacon-python` Web Server requires:
-* Python 3.6+;
+* Python 3.8+;
 * running DB [PostgreSQL Server](https://www.postgresql.org/) 9.6+ (recommended 11.6).
 
 ```shell

beacon_api/app.py

@@ -125,11 +125,17 @@ def main():
     # sslcontext.load_cert_chain(ssl_certfile, ssl_keyfile)
     # sslcontext = ssl.create_default_context(ssl.Purpose.CLIENT_AUTH)
     # sslcontext.check_hostname = False
-    web.run_app(init(), host=os.environ.get("HOST", "0.0.0.0"), port=os.environ.get("PORT", "5050"), shutdown_timeout=0, ssl_context=None)  # nosec  # nosec
+    web.run_app(
+        init(),
+        host=os.environ.get("HOST", "0.0.0.0"),
+        port=os.environ.get("PORT", "5050"),
+        shutdown_timeout=0,
+        ssl_context=None,
+    )  # nosec  # nosec
 
 
 if __name__ == "__main__":
-    if sys.version_info < (3, 6):
-        LOG.error("beacon-python requires python 3.6")
+    if sys.version_info < (3, 8):
+        LOG.error("beacon-python requires python 3.8")
         sys.exit(1)
     main()

docs/instructions.rst

@@ -3,7 +3,7 @@ Instructions
 
 .. note:: In order to run ``beacon-python`` Web Server requirements are as specified below:
 
-  * Python 3.6+;
+  * Python 3.8+;
   * running DB `PostgreSQL Server <https://www.postgresql.org/>`_  9.6+ (recommended 11.6).
 
 .. _env-setup:

requirements.txt

@@ -1,16 +1,12 @@
 aiohttp==3.8.1
 aiohttp-cors==0.7.0
 asyncpg==0.25.0
-jsonschema==3.2.0; python_version < '3.7'
-jsonschema==4.3.2; python_version >= '3.7'
+jsonschema==4.3.2
 Cython==0.29.26
-cyvcf2==0.10.1; python_version < '3.7'
-cyvcf2; python_version >= '3.7'
-uvloop==0.14.0; python_version < '3.7'
-uvloop==0.16.0; python_version >= '3.7'
+cyvcf2==0.30.14
+uvloop==0.16.0
 aiocache==0.11.1
-ujson==4.3.0; python_version < '3.7'
-ujson==5.1.0; python_version >= '3.7'
+ujson==5.1.0
 aiomcache==0.6.0
 Authlib==0.15.5
 gunicorn==20.1.0

setup.py

@@ -33,31 +33,26 @@
         "Topic :: Internet :: WWW/HTTP :: HTTP Servers",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
         "License :: OSI Approved :: Apache Software License",
-        "Programming Language :: Python :: 3.6",
         "Programming Language :: Python :: 3.7",
+        "Programming Language :: Python :: 3.8",
     ],
     install_requires=[
         "asyncpg==0.25.0",
         "aiohttp==3.8.1",
         "Authlib==0.15.5",
         "aiohttp-cors==0.7.0",
-        "jsonschema==3.2.0; python_version < '3.7'",
-        "jsonschema==4.3.2; python_version >= '3.7'",
+        "jsonschema==4.3.2",
         "gunicorn==20.1.0",
-        "uvloop==0.14.0; python_version < '3.7'",
-        "uvloop==0.16.0; python_version >= '3.7'",
-        "cyvcf2==0.10.1; python_version < '3.7'",
-        "cyvcf2; python_version >= '3.7'",
+        "uvloop==0.16.0",
+        "cyvcf2==0.30.14",
         "aiocache==0.11.1",
         "aiomcache==0.6.0",
-        "ujson==4.3.0; python_version < '3.7'",
-        "ujson==5.1.0; python_version >= '3.7'",
+        "ujson==5.1.0",
     ],
     extras_require={
         "vcf": [
-            "cyvcf2==0.10.1; python_version < '3.7'",
             "numpy==1.21.5",
-            "cyvcf2; python_version >= '3.7'",
+            "cyvcf2==0.30.14",
             "Cython==0.29.26",
         ],
         "test": [

tox.ini

@@ -1,5 +1,5 @@
 [tox]
-envlist = py{36,38},flake8,docs,bandit,unit_tests,mypy, black
+envlist = flake8,docs,bandit,unit_tests,mypy
 skipsdist = True
 
 [flake8]
@@ -56,5 +56,4 @@ commands = py.test  -x --cov=beacon_api tests/ --cov-fail-under=80
 
 [gh-actions]
 python =
-    3.6: unit_tests
-    3.8: flake8, black, unit_tests, docs, bandit, mypy
+    3.8: flake8, unit_tests, docs, bandit, mypy