v0.5.1

New features

oarfish now outputs a file of the form <output_stem>.ambig_info.tsv. This file has a number of rows equal to the number of transcripts in the quantified transcriptome (plus a header). It records, for each transcript (in the same order in which they appear in <output_stem>.quant) the number of unique, ambiguous, and total (unique + ambiguous) reads aligning to each transcript.

Improvements

oarfish v0.5.1 will dedicate > 1 thread to bam file chunk decompression if >2 threads are passed on the command line.

Install oarfish 0.5.1

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/oarfish/releases/download/v0.5.1/oarfish-installer.sh | sh

Download oarfish 0.5.1

File	Platform	Checksum
oarfish-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
oarfish-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
oarfish-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum