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@github-actions github-actions released this 02 Mar 03:27
· 147 commits to main since this release
v0.3.0
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oarfish 0.3.0

This version contains a major new feature and a small bug fix from 0.2.0.

  • This version addresses a collision in the short command line option -t in version 0.2.0, which was used both for the number of threads and the 3' clip distance. In version 0.3.0, the short option for threads is -j instead. The long options for both arguments remains the same.

  • This version adds support for the generation of inferential replicates via bootstrap sampling. oarfish now accepts a parameter --num-bootstraps (default value of 0). If you pass a value > 0, then, after the main inference, oarfish will draw the requested number of bootstrap replicates. The samples (expected counts) are written to a parquet data frame in a file specified by <outputstem>.infreps.pq.

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/oarfish/releases/download/v0.3.0/oarfish-installer.sh | sh

Download oarfish 0.3.0

File Platform Checksum
oarfish-aarch64-apple-darwin.tar.xz Apple Silicon macOS checksum
oarfish-x86_64-apple-darwin.tar.xz Intel macOS checksum
oarfish-x86_64-unknown-linux-gnu.tar.xz x64 Linux checksum
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