Skip to content

Fix to properly run the command within the docker instance. #39

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: main
Choose a base branch
from

Conversation

jmfernandez
Copy link

Not all the docker images have to have /bin/sh shell,
and the command line itself is obtained from the received TES request.

So, instead of writing the command to a shell script, and running the shell script within the container instance, the patch makes docker running the command within the container instance.

If this patch is accepted, some janitorial work would be needed, as all the script generation and permissions setting machinery could be removed.

Also, a similar change should be applied for the scenarios where singularity is being used instead of docker

Not all the images have to have `/bin/sh` shell,
and the command line itself is obtained from the received TES request.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant