adding command line for dsm2 analyze

examples/calsim_dsm2_analysis/config.yaml

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+output_locations: "info/DSM2_bnd_loc.csv"
+scenarios:
+  - name: "1ex_2020c"
+    fpath: "scenarios/1ex_2020c.dss"
+  - name: "9b_v2_2020"
+    fpath: "scenarios/9b_v2_2020.dss"
+variable: "FLOW"
+interval: "1MON"
+calsim_file: "scenarios/calsim.dss"
+period: 
+  - "1921-01-01"
+  - "2020-09-30"
+plots:
+  - type: "plot_step_w_variable_station_filters"
+    options:
+      yaxis_name: "Monthly Mean Flow (cfs)"
+      title: "Flow Monthly Mean Timelines"
+  - type: "plot_bar_monthly_w_controls"
+    options:
+      yaxis_name: "Monthly Mean Flow (cfs)"
+      title: "Flow Monthly Barcharts of Monthly Mean"
+  - type: "plot_exceedance_w_variable_station_filters"
+    options:
+      yaxis_name: "Monthly Mean Flow (cfs)"
+      title: "Flow Monthly Mean Exceedances"
+  - type: "plot_box_w_variable_station_filters"
+    options:
+      xaxis_name: "Monthly Mean Flow (cfs)"
+      title: "Flow Monthly Mean Box-Whiskers"

examples/calsim_dsm2_analysis/info/D1641_AG_export.csv

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+location,wyt,month,date,val
+# Tracy Export (DMC-1)(monthly avg of daily EC)
+CHDMC006,W,10,1,1
+CHDMC006,AN,10,1,1
+CHDMC006,BN,10,1,1
+CHDMC006,D,10,1,1
+CHDMC006,C,10,1,1
+# Banks Export (C-9)(monthly avg of daily EC)
+CHSWP003,W,10,1,1
+CHSWP003,AN,10,1,1
+CHSWP003,BN,10,1,1
+CHSWP003,D,10,1,1
+CHSWP003,C,10,1,1

examples/calsim_dsm2_analysis/info/D1641_AG_sDelta.csv

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+location,wyt,month,date,val
+# transition month Apr: start checking on Apr.30
+# transition month Sep: start checking on Oct.1
+# San Joaquin River at Vernalis (C-10)(30-day running avg of daily EC)
+RSAN112,W,10,1,1
+RSAN112,W,4,30,0.7
+RSAN112,W,9,1,1
+RSAN112,AN,10,1,1
+RSAN112,AN,4,30,0.7
+RSAN112,AN,9,1,1
+RSAN112,BN,10,1,1
+RSAN112,BN,4,30,0.7
+RSAN112,BN,9,1,1
+RSAN112,D,10,1,1
+RSAN112,D,4,30,0.7
+RSAN112,D,9,1,1
+RSAN112,C,10,1,1
+RSAN112,C,4,30,0.7
+RSAN112,C,9,1,1
+# San Joaquin River at Brandt Bridge (C-6)(30-day running avg of daily EC)
+RSAN072,W,10,1,1
+RSAN072,W,4,30,0.7
+RSAN072,W,9,1,1
+RSAN072,AN,10,1,1
+RSAN072,AN,4,30,0.7
+RSAN072,AN,9,1,1
+RSAN072,BN,10,1,1
+RSAN072,BN,4,30,0.7
+RSAN072,BN,9,1,1
+RSAN072,D,10,1,1
+RSAN072,D,4,30,0.7
+RSAN072,D,9,1,1
+RSAN072,C,10,1,1
+RSAN072,C,4,30,0.7
+RSAN072,C,9,1,1
+# Old River near Middle River (C-8)(30-day running avg of daily EC)
+OLD_MID,W,10,1,1
+OLD_MID,W,4,30,0.7
+OLD_MID,W,9,1,1
+OLD_MID,AN,10,1,1
+OLD_MID,AN,4,30,0.7
+OLD_MID,AN,9,1,1
+OLD_MID,BN,10,1,1
+OLD_MID,BN,4,30,0.7
+OLD_MID,BN,9,1,1
+OLD_MID,D,10,1,1
+OLD_MID,D,4,30,0.7
+OLD_MID,D,9,1,1
+OLD_MID,C,10,1,1
+OLD_MID,C,4,30,0.7
+OLD_MID,C,9,1,1
+# Old River at Tracy (P-12)(30-day running avg of daily EC)
+ROLD059,W,10,1,1
+ROLD059,W,4,30,0.7
+ROLD059,W,9,1,1
+ROLD059,AN,10,1,1
+ROLD059,AN,4,30,0.7
+ROLD059,AN,9,1,1
+ROLD059,BN,10,1,1
+ROLD059,BN,4,30,0.7
+ROLD059,BN,9,1,1
+ROLD059,D,10,1,1
+ROLD059,D,4,30,0.7
+ROLD059,D,9,1,1
+ROLD059,C,10,1,1
+ROLD059,C,4,30,0.7
+ROLD059,C,9,1,1

examples/calsim_dsm2_analysis/info/D1641_AG_wiDelta.csv

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+location,wyt,month,date,val
+# Sacramento River at Emmaton (D-22)(14-day running avg of daily EC)
+RSAC092,W,10,1,0
+RSAC092,W,4,1,0.45
+RSAC092,W,8,16,0
+RSAC092,AN,10,1,0
+RSAC092,AN,4,1,0.45
+RSAC092,AN,7,2,0.63
+RSAC092,AN,8,16,0
+RSAC092,BN,10,1,0
+RSAC092,BN,4,1,0.45
+RSAC092,BN,6,21,1.14
+RSAC092,BN,8,16,0
+RSAC092,D,10,1,0
+RSAC092,D,4,1,0.45
+RSAC092,D,6,16,1.67
+RSAC092,D,8,16,0
+RSAC092,C,10,1,0
+RSAC092,C,4,1,2.78
+RSAC092,C,8,16,0
+# San Joaquin River at Jersey Point (D-15)(14-day running avg of daily EC)
+RSAN018,W,10,1,0
+RSAN018,W,4,1,0.45
+RSAN018,W,8,16,0
+RSAN018,AN,10,1,0
+RSAN018,AN,4,1,0.45
+RSAN018,AN,8,16,0
+RSAN018,BN,10,1,0
+RSAN018,BN,4,1,0.45
+RSAN018,BN,6,21,0.74
+RSAN018,BN,8,16,0
+RSAN018,D,10,1,0
+RSAN018,D,4,1,0.45
+RSAN018,D,6,16,1.35
+RSAN018,D,8,16,0
+RSAN018,C,10,1,0
+RSAN018,C,4,1,2.2
+RSAN018,C,8,16,0
+# South Fork Mokelumne River at Terminous (C-13)(14-day running avg of daily EC)
+RSMKL008,W,10,1,0
+RSMKL008,W,4,1,0.45
+RSMKL008,W,8,16,0
+RSMKL008,AN,10,1,0
+RSMKL008,AN,4,1,0.45
+RSMKL008,AN,8,16,0
+RSMKL008,BN,10,1,0
+RSMKL008,BN,4,1,0.45
+RSMKL008,BN,8,16,0
+RSMKL008,D,10,1,0
+RSMKL008,D,4,1,0.45
+RSMKL008,D,8,16,0
+RSMKL008,C,10,1,0
+RSMKL008,C,4,1,0.54
+RSMKL008,C,8,16,0
+# San Joaquin River at San Andreas Landing (C-4)(14-day running avg of daily EC)
+RSAN032,W,10,1,0
+RSAN032,W,4,1,0.45
+RSAN032,W,8,16,0
+RSAN032,AN,10,1,0
+RSAN032,AN,4,1,0.45
+RSAN032,AN,8,16,0
+RSAN032,BN,10,1,0
+RSAN032,BN,4,1,0.45
+RSAN032,BN,8,16,0
+RSAN032,D,10,1,0
+RSAN032,D,4,1,0.45
+RSAN032,D,6,26,0.58
+RSAN032,D,8,16,0
+RSAN032,C,10,1,0
+RSAN032,C,4,1,0.87
+RSAN032,C,8,16,0

examples/calsim_dsm2_analysis/info/D1641_FWS_SJR.csv

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+location,wyt,month,date,val
+# San Joaquin River at Jersey Point (D-15)(14-day running avg of daily EC)
+RSAN018,W,10,1,0
+RSAN018,W,4,1,0.44
+RSAN018,W,6,1,0
+RSAN018,AN,10,1,0
+RSAN018,AN,4,1,0.44
+RSAN018,AN,6,1,0
+RSAN018,BN,10,1,0
+RSAN018,BN,4,1,0.44
+RSAN018,BN,6,1,0
+RSAN018,D,10,1,0
+RSAN018,D,4,1,0.44
+RSAN018,D,6,1,0
+RSAN018,C,10,1,0
+# San Joaquin River at Prisoners Point (D-29)(14-day running avg of daily EC)
+RSAN037,W,10,1,0
+RSAN037,W,4,1,0.44
+RSAN037,W,6,1,0
+RSAN037,AN,10,1,0
+RSAN037,AN,4,1,0.44
+RSAN037,AN,6,1,0
+RSAN037,BN,10,1,0
+RSAN037,BN,4,1,0.44
+RSAN037,BN,6,1,0
+RSAN037,D,10,1,0
+RSAN037,D,4,1,0.44
+RSAN037,D,6,1,0
+RSAN037,C,10,1,0

examples/calsim_dsm2_analysis/info/D1641_FWS_Suisun.csv

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+location,wyt,month,date,val
+# monthly average of daily-max EC (or average of 2 high-tides)
+# Sacramento at Collinsville (C-2)
+RSAC081,W,10,1,19
+RSAC081,W,11,1,15.5
+RSAC081,W,1,1,12.5
+RSAC081,W,2,1,8
+RSAC081,W,4,1,11
+RSAC081,W,6,1,0
+RSAC081,AN,10,1,19
+RSAC081,AN,11,1,15.5
+RSAC081,AN,1,1,12.5
+RSAC081,AN,2,1,8
+RSAC081,AN,4,1,11
+RSAC081,AN,6,1,0
+RSAC081,BN,10,1,19
+RSAC081,BN,11,1,15.5
+RSAC081,BN,1,1,12.5
+RSAC081,BN,2,1,8
+RSAC081,BN,4,1,11
+RSAC081,BN,6,1,0
+RSAC081,D,10,1,19
+RSAC081,D,11,1,15.5
+RSAC081,D,1,1,12.5
+RSAC081,D,2,1,8
+RSAC081,D,4,1,11
+RSAC081,D,6,1,0
+RSAC081,C,10,1,19
+RSAC081,C,11,1,15.5
+RSAC081,C,1,1,12.5
+RSAC081,C,2,1,8
+RSAC081,C,4,1,11
+RSAC081,C,6,1,0
+# Montezuma Slough at National Steel (S-64)
+SLMZU025,W,10,1,19
+SLMZU025,W,11,1,15.5
+SLMZU025,W,1,1,12.5
+SLMZU025,W,2,1,8
+SLMZU025,W,4,1,11
+SLMZU025,W,6,1,0
+SLMZU025,AN,10,1,19
+SLMZU025,AN,11,1,15.5
+SLMZU025,AN,1,1,12.5
+SLMZU025,AN,2,1,8
+SLMZU025,AN,4,1,11
+SLMZU025,AN,6,1,0
+SLMZU025,BN,10,1,19
+SLMZU025,BN,11,1,15.5
+SLMZU025,BN,1,1,12.5
+SLMZU025,BN,2,1,8
+SLMZU025,BN,4,1,11
+SLMZU025,BN,6,1,0
+SLMZU025,D,10,1,19
+SLMZU025,D,11,1,15.5
+SLMZU025,D,1,1,12.5
+SLMZU025,D,2,1,8
+SLMZU025,D,4,1,11
+SLMZU025,D,6,1,0
+SLMZU025,C,10,1,19
+SLMZU025,C,11,1,15.5
+SLMZU025,C,1,1,12.5
+SLMZU025,C,2,1,8
+SLMZU025,C,4,1,11
+SLMZU025,C,6,1,0
+# Montezuma Slough near Beldon Landing (S-49)
+SLMZU011,W,10,1,19
+SLMZU011,W,11,1,15.5
+SLMZU011,W,1,1,12.5
+SLMZU011,W,2,1,8
+SLMZU011,W,4,1,11
+SLMZU011,W,6,1,0
+SLMZU011,AN,10,1,19
+SLMZU011,AN,11,1,15.5
+SLMZU011,AN,1,1,12.5
+SLMZU011,AN,2,1,8
+SLMZU011,AN,4,1,11
+SLMZU011,AN,6,1,0
+SLMZU011,BN,10,1,19
+SLMZU011,BN,11,1,15.5
+SLMZU011,BN,1,1,12.5
+SLMZU011,BN,2,1,8
+SLMZU011,BN,4,1,11
+SLMZU011,BN,6,1,0
+SLMZU011,D,10,1,19
+SLMZU011,D,11,1,15.5
+SLMZU011,D,1,1,12.5
+SLMZU011,D,2,1,8
+SLMZU011,D,4,1,11
+SLMZU011,D,6,1,0
+SLMZU011,C,10,1,19
+SLMZU011,C,11,1,15.5
+SLMZU011,C,1,1,12.5
+SLMZU011,C,2,1,8
+SLMZU011,C,4,1,11
+SLMZU011,C,6,1,0
+# Chadbourne Slough at Sunrise Duck Club (S21)
+SLCBN002,W,10,1,19
+SLCBN002,W,11,1,16.5
+SLCBN002,W,12,1,15.5
+SLCBN002,W,1,1,12.5
+SLCBN002,W,2,1,8
+SLCBN002,W,4,1,11
+SLCBN002,W,6,1,0
+SLCBN002,AN,10,1,19
+SLCBN002,AN,11,1,16.5
+SLCBN002,AN,12,1,15.5
+SLCBN002,AN,1,1,12.5
+SLCBN002,AN,2,1,8
+SLCBN002,AN,4,1,11
+SLCBN002,AN,6,1,0
+SLCBN002,BN,10,1,19
+SLCBN002,BN,11,1,16.5
+SLCBN002,BN,12,1,15.5
+SLCBN002,BN,1,1,12.5
+SLCBN002,BN,2,1,8
+SLCBN002,BN,4,1,11
+SLCBN002,BN,6,1,0
+SLCBN002,D,10,1,19
+SLCBN002,D,11,1,16.5
+SLCBN002,D,12,1,15.5
+SLCBN002,D,1,1,12.5
+SLCBN002,D,2,1,8
+SLCBN002,D,4,1,11
+SLCBN002,D,6,1,0
+SLCBN002,C,10,1,19
+SLCBN002,C,11,1,16.5
+SLCBN002,C,12,1,15.5
+SLCBN002,C,1,1,12.5
+SLCBN002,C,2,1,8
+SLCBN002,C,4,1,11
+SLCBN002,C,6,1,0
+# Volanti Slough (S-42)
+SLSUS012,W,10,1,19
+SLSUS012,W,11,1,16.5
+SLSUS012,W,12,1,15.5
+SLSUS012,W,1,1,12.5
+SLSUS012,W,2,1,8
+SLSUS012,W,4,1,11
+SLSUS012,W,6,1,0
+SLSUS012,AN,10,1,19
+SLSUS012,AN,11,1,16.5
+SLSUS012,AN,12,1,15.5
+SLSUS012,AN,1,1,12.5
+SLSUS012,AN,2,1,8
+SLSUS012,AN,4,1,11
+SLSUS012,AN,6,1,0
+SLSUS012,BN,10,1,19
+SLSUS012,BN,11,1,16.5
+SLSUS012,BN,12,1,15.5
+SLSUS012,BN,1,1,12.5
+SLSUS012,BN,2,1,8
+SLSUS012,BN,4,1,11
+SLSUS012,BN,6,1,0
+SLSUS012,D,10,1,19
+SLSUS012,D,11,1,16.5
+SLSUS012,D,12,1,15.5
+SLSUS012,D,1,1,12.5
+SLSUS012,D,2,1,8
+SLSUS012,D,4,1,11
+SLSUS012,D,6,1,0
+SLSUS012,C,10,1,19
+SLSUS012,C,11,1,16.5
+SLSUS012,C,12,1,15.5
+SLSUS012,C,1,1,12.5
+SLSUS012,C,2,1,8
+SLSUS012,C,4,1,11
+SLSUS012,C,6,1,0

examples/calsim_dsm2_analysis/info/D1641_MI_150.csv

@@ -0,0 +1,8 @@
+location,wyt,month,date,val
+# Contra Costa Canal (C-5)(daily Chloride)
+ROLD024,W,1,1,240
+ROLD024,AN,1,1,190
+ROLD024,BN,1,1,175
+ROLD024,D,1,1,165
+ROLD024,C,1,1,155
+