[hackathon-data-analysis] Observations Plots

package.json

@@ -32,6 +32,7 @@
     "flat": "^5.0.2",
     "focus-trap": "^5.1.0",
     "focus-trap-vue": "0.0.6",
+    "plotly.js": "^2.11.1",
     "title-case": "^3.0.3",
     "uuid": "^8.3.2",
     "valid-url": "^1.0.9",
@@ -43,6 +44,7 @@
     "vue-feather-icons": "^5.1.0",
     "vue-gtag": "^1.16.1",
     "vue-json-tree-view": "^2.1.6",
+    "vue-plotly": "^1.1.0",
     "vue-property-decorator": "^8.3.0",
     "vue-qrcode-component": "^2.1.1",
     "vue-router": "^3.1.3",
@@ -57,6 +59,7 @@
     "@types/chai": "^4.2.7",
     "@types/d3": "^7.1.0",
     "@types/jest": "^24.9.0",
+    "@types/plotly.js": "^1.54.20",
     "@types/uuid": "^8.3.0",
     "@vue/cli-plugin-babel": "^4.1.0",
     "@vue/cli-plugin-e2e-cypress": "^4.1.0",

src/breeding-insight/brapi/model/basePagination.ts

@@ -0,0 +1,26 @@
+/**
+ * BrAPI-Core
+ * The Breeding API (BrAPI) is a Standardized REST ful Web Service API Specification for communicating Plant Breeding Data. BrAPI allows for easy data sharing between databases and tools involved in plant breeding. <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">General Reference Documentation</h2> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/URL_Structure.md\">URL Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Response_Structure.md\">Response Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Date_Time_Encoding.md\">Date/Time Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Location_Encoding.md\">Location Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Error_Handling.md\">Error Handling</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Search_Services.md\">Search Services</a></div> </div>  <div class=\"current-brapi-section brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Core</h2> <div class=\"brapi-section-description\">The BrAPI Core module contains high level entities used for organization and management. This includes Programs, Trials, Studies, Locations, People, and Lists</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Core\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Core\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapicore.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Phenotyping</h2> <div class=\"brapi-section-description\">The BrAPI Phenotyping module contains entities related to phenotypic observations. This includes Observation Units, Observations, Observation Variables, Traits, Scales, Methods, and Images</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Phenotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Phenotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapiphenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Genotyping</h2> <div class=\"brapi-section-description\">The BrAPI Genotyping module contains entities related to genotyping analysis. This includes Samples, Markers, Variant Sets, Variants, Call Sets, Calls, References, Reads, and Vendor Orders</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Genotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Genotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Germplasm</h2> <div class=\"brapi-section-description\">The BrAPI Germplasm module contains entities related to germplasm management. This includes Germplasm, Germplasm Attributes, Seed Lots, Crosses, Pedigree, and Progeny</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Germplasm\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Germplasm\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigermplasm.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <style> .link-btn{ float: left;  margin: 2px 10px 0 0;  padding: 0 5px;  border-radius: 5px;  background-color: #ddd; } .stop-float{   clear: both; } .version-number{   float: left;    margin: 5px 10px 0 5px; } .brapi-section-title{   margin: 0 10px 0 0;   font-size: 20px; } .current-brapi-section{   font-weight: bolder;   border-radius: 5px;    background-color: #ddd; } .brapi-section{   padding: 5px 5px;  } .brapi-section-description{   margin: 5px 0 0 5px; } </style>
+ *
+ * OpenAPI spec version: 2.0
+ * 
+ *
+ * NOTE: This class is auto generated by the swagger code generator program.
+ * https://github.com/swagger-api/swagger-codegen.git
+ * Do not edit the class manually.
+ */
+
+export interface BasePagination { 
+    /**
+     * The number of data elements returned, aka the size of the current page. If the requested page does not have enough elements to fill a page at the requested page size, this field should indicate the actual number of elements returned.
+     */
+    pageSize: number;
+    /**
+     * The total number of elements that are available on the server and match the requested query parameters.
+     */
+    totalCount?: number;
+    /**
+     * The total number of pages of elements available on the server. This should be calculated with the following formula.   totalPages = CEILING( totalCount / requested_page_size)
+     */
+    totalPages?: number;
+}

src/breeding-insight/brapi/model/breedingMethod.ts

@@ -0,0 +1,30 @@
+/**
+ * BrAPI-Germplasm
+ * The Breeding API (BrAPI) is a Standardized REST ful Web Service API Specification for communicating Plant Breeding Data. BrAPI allows for easy data sharing between databases and tools involved in plant breeding. <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">General Reference Documentation</h2> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/URL_Structure.md\">URL Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Response_Structure.md\">Response Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Date_Time_Encoding.md\">Date/Time Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Location_Encoding.md\">Location Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Error_Handling.md\">Error Handling</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Search_Services.md\">Search Services</a></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Core</h2> <div class=\"brapi-section-description\">The BrAPI Core module contains high level entities used for organization and management. This includes Programs, Trials, Studies, Locations, People, and Lists</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Core\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Core\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapicore.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Phenotyping</h2> <div class=\"brapi-section-description\">The BrAPI Phenotyping module contains entities related to phenotypic observations. This includes Observation Units, Observations, Observation Variables, Traits, Scales, Methods, and Images</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Phenotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Phenotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapiphenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Genotyping</h2> <div class=\"brapi-section-description\">The BrAPI Genotyping module contains entities related to genotyping analysis. This includes Samples, Markers, Variant Sets, Variants, Call Sets, Calls, References, Reads, and Vendor Orders</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Genotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Genotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"current-brapi-section brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Germplasm</h2> <div class=\"brapi-section-description\">The BrAPI Germplasm module contains entities related to germplasm management. This includes Germplasm, Germplasm Attributes, Seed Lots, Crosses, Pedigree, and Progeny</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Germplasm\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Germplasm\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigermplasm.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <style> .link-btn{ float: left;  margin: 2px 10px 0 0;  padding: 0 5px;  border-radius: 5px;  background-color: #ddd; } .stop-float{   clear: both; } .version-number{   float: left;    margin: 5px 10px 0 5px; } .brapi-section-title{   margin: 0 10px 0 0;   font-size: 20px; } .current-brapi-section{   font-weight: bolder;   border-radius: 5px;    background-color: #ddd; } .brapi-section{   padding: 5px 5px;  } .brapi-section-description{   margin: 5px 0 0 5px; } </style>
+ *
+ * OpenAPI spec version: 2.0
+ * 
+ *
+ * NOTE: This class is auto generated by the swagger code generator program.
+ * https://github.com/swagger-api/swagger-codegen.git
+ * Do not edit the class manually.
+ */
+
+export interface BreedingMethod { 
+    /**
+     * an abbreviation for the name of this breeding method
+     */
+    abbreviation?: string;
+    /**
+     * the unique identifier for this breeding method
+     */
+    breedingMethodDbId: string;
+    /**
+     * human readable name of the breeding method
+     */
+    breedingMethodName?: string;
+    /**
+     * human readable description of the breeding method
+     */
+    description?: string;
+}

src/breeding-insight/brapi/model/breedingMethodListResponse.ts

@@ -0,0 +1,20 @@
+/**
+ * BrAPI-Germplasm
+ * The Breeding API (BrAPI) is a Standardized REST ful Web Service API Specification for communicating Plant Breeding Data. BrAPI allows for easy data sharing between databases and tools involved in plant breeding. <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">General Reference Documentation</h2> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/URL_Structure.md\">URL Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Response_Structure.md\">Response Structure</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Date_Time_Encoding.md\">Date/Time Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Location_Encoding.md\">Location Encoding</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Error_Handling.md\">Error Handling</a></div> <div class=\"gen-info-link\"><a href=\"https://github.com/plantbreeding/API/blob/master/Specification/GeneralInfo/Search_Services.md\">Search Services</a></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Core</h2> <div class=\"brapi-section-description\">The BrAPI Core module contains high level entities used for organization and management. This includes Programs, Trials, Studies, Locations, People, and Lists</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Core\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Core\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapicore.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Phenotyping</h2> <div class=\"brapi-section-description\">The BrAPI Phenotyping module contains entities related to phenotypic observations. This includes Observation Units, Observations, Observation Variables, Traits, Scales, Methods, and Images</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Phenotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Phenotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapiphenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Genotyping</h2> <div class=\"brapi-section-description\">The BrAPI Genotyping module contains entities related to genotyping analysis. This includes Samples, Markers, Variant Sets, Variants, Call Sets, Calls, References, Reads, and Vendor Orders</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Genotyping\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Genotyping\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigenotyping.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <div class=\"current-brapi-section brapi-section\"> <h2 class=\"brapi-section-title\">BrAPI Germplasm</h2> <div class=\"brapi-section-description\">The BrAPI Germplasm module contains entities related to germplasm management. This includes Germplasm, Germplasm Attributes, Seed Lots, Crosses, Pedigree, and Progeny</div> <div class=\"version-number\">V2.0</div> <div class=\"link-btn\"><a href=\"https://github.com/plantbreeding/API/tree/master/Specification/BrAPI-Germplasm\">GitHub</a></div> <div class=\"link-btn\"><a href=\"https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Germplasm\">SwaggerHub</a></div> <div class=\"link-btn\"><a href=\"https://brapigermplasm.docs.apiary.io\">Apiary</a></div> <div class=\"stop-float\"></div> </div>  <style> .link-btn{ float: left;  margin: 2px 10px 0 0;  padding: 0 5px;  border-radius: 5px;  background-color: #ddd; } .stop-float{   clear: both; } .version-number{   float: left;    margin: 5px 10px 0 5px; } .brapi-section-title{   margin: 0 10px 0 0;   font-size: 20px; } .current-brapi-section{   font-weight: bolder;   border-radius: 5px;    background-color: #ddd; } .brapi-section{   padding: 5px 5px;  } .brapi-section-description{   margin: 5px 0 0 5px; } </style>
+ *
+ * OpenAPI spec version: 2.0
+ * 
+ *
+ * NOTE: This class is auto generated by the swagger code generator program.
+ * https://github.com/swagger-api/swagger-codegen.git
+ * Do not edit the class manually.
+ */
+import { BreedingMethodListResponseResult } from './breedingMethodListResponseResult';
+import { Context } from './context';
+import { Metadata } from './metadata';
+
+export interface BreedingMethodListResponse { 
+    context?: Context;
+    metadata: Metadata;
+    result: BreedingMethodListResponseResult;
+}