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updated schedule and descriptions + thumbnails #44

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Mar 15, 2025
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213 changes: 123 additions & 90 deletions config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ event:
month: 3
year: 2025
displaySections:
tutorial: false
tutorial: true
schedule: true
twitterFeed: false
twitterUrl: https://twitter.com/uwobrainhack
Expand Down Expand Up @@ -152,27 +152,27 @@ schedule:
duration: '1:00'
color: blue
room:
- TBD
- WIRB 4190 (Lunchroom)
- tutorial: prereg
time: '10:00'
duration: '1:00'
color: '#007c62'
room:
- TBD
priority: 2
- tutorial: bayesian
time: '10:00'
duration: '1:00'
color: green
room:
- TBD
- WIRB 4190 (Lunchroom)
priority: 1
# - tutorial: bayesian
# time: '10:00'
# duration: '1:00'
# color: green
# room:
# - TBD
# priority: 1
- tutorial: eeg-bids
time: '11:00'
duration: '1:00'
color: green
room:
- TBD
- WIRB 4190 (Lunchroom)
- name: Lunch
time: '12:00'
duration: '1:00'
Expand All @@ -183,28 +183,20 @@ schedule:
color: '#1f331e'
priority: 1
room:
- TBD
- tutorial: monai
- WIRB 4190 (Lunchroom)
- tutorial: 3dprint
time: '14:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room:
- TBD
room:
- WIRB 4190 (Lunchroom)
- tutorial: tms
time: '15:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room:
- TBD
- tutorial: mystmd
time: '15:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room:
- TBD
room: WIRB 4190 (Lunchroom)
- day: 27
month: 3
year: 2025
Expand All @@ -213,40 +205,53 @@ schedule:
time: '9:00'
duration: '1:00'
room: WIRB 4190 (Lunchroom)
- tutorial: dataman
- name: Hack Time
time: '10:00'
duration: '1:00'
color: '#007c62'
duration: '2:00'
room: WIRB 4190 (Lunchroom)
color: '#222233'
priority: 1
room: TBD
- tutorial: anat
time: '11:00'
- tutorial: writing
time: '10:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room: TBD
priority: 2
room: WIRB 3000
- tutorial: reprod
time: '11:00'
duration: '1:00'
color: '#007c62'
priority: 2
room: WIRB 3000
- name: Lunch
time: '12:00'
duration: '1:00'
room: WIRB 4190 (Lunchroom)
- tutorial: fnirs
- name: Hack Time
time: '13:00'
duration: '3:00'
room: WIRB 4190 (Lunchroom)
color: '#222233'
priority: 1
- tutorial: mystmd
time: '13:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room: TBD
- tutorial: dti-mri
priority: 2
room: WIRB 4190 (Lunchroom)
- tutorial: fnirs
time: '14:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room: TBD
- tutorial: 3dprint
priority: 2
room: WIRB 3000
- tutorial: monai
time: '15:00'
duration: '1:00'
color: '#1f331e'
priority: 1
room: TBD
priority: 2
room: WIRB 3000

- day: 28
month: 3
year: 2025
Expand All @@ -255,33 +260,57 @@ schedule:
time: '9:00'
duration: '1:00'
room: WIRB 4190 (Lunchroom)
- name: Hack Time
time: '10:00'
duration: '2:00'
room: WIRB 4190 (Lunchroom)
color: '#222233'
priority: 1
- tutorial: git
time: '10:00'
duration: '1:00'
color: '#007c62'
priority: 1
room: TBD
- tutorial: reprod
priority: 2
room: WIRB 3000
- tutorial: datacol
time: '11:00'
duration: '1:00'
color: '#007c62'
priority: 1
room: TBD
color: '#1f331e'
priority: 2
room: WIRB 3000
- name: Lunch
time: '12:00'
duration: '1:00'
room: WIRB 4190 (Lunchroom)
- tutorial: writing
- name: Hack Time
time: '13:00'
duration: '1:00'
color: '#1f331e'
room: WIRB 4190 (Lunchroom)
color: '#222233'
priority: 1
room: TBD
- tutorial: dataman
time: '13:00'
duration: '1:00'
color: '#007c62'
priority: 2
room: WIRB 3000
- tutorial: dti-mri
time: '14:00'
duration: '1:00'
color: '#1f331e'
priority: 2
room: WIRB 3000
- tutorial: anat
time: '14:00'
duration: '1:00'
color: '#1f331e'
priority: 3
room: WIRB 3000
- name: Project presentations
time: '15:00'
duration: '1:00'
color: blue
room: TBD
room: WIRB 3000
- name: Grad Club Networking Event
time: '16:00'
duration: '1:30'
Expand All @@ -291,41 +320,48 @@ tutorials:
- id: dti-mri
name: Introduction to DTI and MRI
organizer:
- TBD
- Bradley Karat
image: /img/dfmri.png
description: |
# This joint tutorial will cover both the basics of diffusion
# MRI and functional MRI. For diffusion MRI, the basics of processing data
# from MRI acquisitions to computing diffusion tensors and tracking the
# structural connectome will be covered. For functional MRI, the basics of
# what aspect of brain function fMRI measures to considerations for
# preprocessing fMRI data will be presented.
This joint tutorial will cover both the basics of diffusion
MRI and functional MRI. For diffusion MRI, the basics of processing data
from MRI acquisitions to computing diffusion tensors and tracking the
structural connectome will be covered. For functional MRI, the basics of
what aspect of brain function fMRI measures to considerations for
preprocessing fMRI data will be presented.
- id: eeg-bids
name: Introduction to EEG and BIDS
organizer: TBA
description: TBD
name: Using EEG-BIDS for data management of large EEG datasets
organizer: Marc Joanisse
image: /img/eegbids.png
description: |
EEG-BIDS is a relatively new standard for the orderly storage of raw EEG/iEEG/MEG datasets and derivatives.
I will demonstrate one possible workflow in which I use the EEGLAB toolbox to convert raw EEG data into BIDS format,
and for integrating existing EEG-BIDS datasets into your analysis workflow.
- id: fnirs
name: Introduction to fNIRS
organizer: TBA
image: /img/review.png
organizer: Matthew Kolisnyk
image: /img/fnirs2.png
description: |
TBA
Participants will learn the basics of functional near-infrared spectroscopy (fNIRS). This includes a demo of the system, the underlying physics and experimental design, as well as some exciting current applications of fNIRS. Participants will also learn about handling and preprocessing fNIRS data -- including some hands on coding!
- id: anat
name: 'Introduction to Neuroanatomy for Researchers'
organizer: TBA
organizer:
- Alaa Taha
- Violet Liu
image: '/img/afids.png'
description: TBA
- id: tms
name: 'Introduction to TMS'
organizer: TBA
image: '/img/tms.png'
description: TBA
organizer:
- Phivos Phylactou
image: '/img/tms2.png'
description: Transcranial Magnetic Stimulation is a safe, non-invasive, tool that enables us to modulate the brain’s regular activity with high spatial and temporal resolution. Forty years since its introduction, TMS has been utilized in a variety of ways; from the labs all the way to the clinics. In this workshop, we will explore how TMS can be employed to causally study the brain’s neural architecture, how it can be used to measure brain activity, and how it can help the maladaptive brain.
- id: prereg
name: 'Open Science: Pre-registration'
image: /img/preregistration.png
image: /img/prereg.png
organizer:
- Christine Moreau
description: TBA
description: In this hands-on workshop, participants will learn the fundamentals of preregistration and how it enhances research transparency and rigor using the Open Science Framework (OSF). Attendees are encouraged to bring their research protocols as there will be the opportunity to receive peer feedback to refine their preregistrations. The session will also cover handling protocol changes post-publication, emphasizing the flexibility of preregistration.
- id: git
name: 'Open Science: Research Code Management (Git)'
image: /img/git-logo.png
Expand All @@ -335,8 +371,6 @@ tutorials:
This tutorial will cover best practices for managing research code with
the ultimate goal of sharing it. Aspects of Git and GitHub, including
version control, branching, collaborations, etc. will be covered.
Additionally, new guidelines to help researchers assess how open and
sharable their code is will be presented.
- id: dataman
name: 'Open Science: Research Data Management (DataLad)'
image: /img/datalad.png
Expand Down Expand Up @@ -373,45 +407,44 @@ tutorials:
- id: writing
name: Scientific Writing
organizer:
- TBA
- Jessica Grahn
image: /img/writing.png
description: TBA
- id: hippunfold
name: HippUnfold Tutorial
organizer:
- TBA
- Ali Khan
image: /img/hippunfold.png
description: TBA
- id: monai
name: MONAI Tutorial
organizer:
- TBA
- Mahmoud Salman
image: /img/monai.png
description: TBA
description: |
A practical, no-theory guide to training deep learning models on neuroimaging data with zero experience. This tutorial covers MONAI, the leading AI framework for medical imaging, simplifying tasks like segmentation and classification. With pre-trained models, automated pipelines, and MONAI Zoo, you’ll apply deep learning to neuroscience research effortlessly—Python experience is required.
- id: 3dprint
name: 3D Printing Tutorial
organizer:
- Mehrdad Kashefi
image: /img/3dprint.png
description: TBA
- Bassel Arafat
image: /img/3dprint2.png
description: |
Many experiments require rapid prototyping of experimental setups. While the traditional method of taping random parts together might work in a pinch, 3D printing offers a faster, more precise, and more robust solution. In this workshop, we’ll provide a brief overview of different 3D printing technologies and materials, followed by a hands-on tutorial on free, online 3D design software. As a fun bonus, we’ll show you how to turn your own MRI structural data into a 3D-printable model.
- id: mystmd
name: MystMD Tutorial
organizer:
- Ricardo Alonso Rios Carrillo
image: /img/mystmd.png
description: TBA
- id: bayesian
name: Baysian Methods for Hackers
organizer:
- Ali Tafakkor
image: /img/bayesian.png
description: TBA
- id: opendata
name: Open Data Analysis
description: |
This tutorial will introduce MystMD (https://mystmd.org/). MyST extends Markdown for technical, scientific communication and publication. MyST is an ecosystem of open-source, community-driven tools designed to revolutionize scientific communication.
The tutorial will cover installation and live code-writing of a short scientific article as a starting example.
- id: datacol
name: 'Data Collection: Best Practices'
organizer:
- Jessica Lammert
image: /img/opendata.png
description: TBA
- Sarah Hollywood
image: /img/datacol.png
description: This workshop centers around the best practices in the approach and conduct of data collection. This will include ethical considerations, how to effectively recruit participants and reduce attrition, improve your communication skills, and how these practices can make you a better researcher.

projects:
2021:
Expand Down
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