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Achievements

Achievement: Pair ExtraordinaireAchievement: Pull SharkAchievement: YOLO

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull SharkAchievement: YOLO

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Bradley-Buchner/README.md

👋 Hey! I'm Bradley, a UNC-Chapel Hill- and Northeastern-trained computational bioengineer interested in all things AI and biology.

Lately, I've been...

  • 🧬 building SynergyGT: a graph transformer model for predicting pairs of gene perturbations that synergistically alter lifespan in the roundworm C. elegans.
  • ⚡ experimenting with biVI: a generative model for scRNA-seq data grounded in the biophysics of transcription.
  • 🤖 contributing to INDRA: an automated knowledge assembly system for molecular biology.
  • 🕸️ working with Mutual Interactors: a network-based machine learning framework for predicting phenotype associations in molecular networks.

🏀 Ask me about my love for UNC Basketball or my admittedly pretentious appreciation of craft beer. You can reach me at bradleybuchner1@gmail.com.

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  1. worm_synergy worm_synergy Public

    SynergyGT is a graph-based transformer model that integrates gene regulatory network topology, gene-phenotype associations, and genetic perturbation data to predict synergistic gene-gene interactions

    Python 1

  2. gyorilab/indra gyorilab/indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 212 77

  3. milieu_worm milieu_worm Public

    Graph-based machine learning implementation for studying genotype-phenotype relationships in C. elegans

    Jupyter Notebook

  4. cs7170_project cs7170_project Public

    Jupyter Notebook