Biochecks

[ncborcherding]

Working through the fixes nessecary to pass BiocChecks for bioconductor submission

[codecov]

Codecov Report

❌ Patch coverage is 12.12121% with 29 lines in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
R/plotNetwork.R	15.00%	17 Missing ⚠️
R/deNovoTCRs.R	0.00%	7 Missing ⚠️
R/utils-reference.R	0.00%	3 Missing ⚠️
R/clusterScoring.R	33.33%	2 Missing ⚠️

Files with missing lines	Coverage Δ
R/getRandomSubsample.R	57.44% <ø> (ø)
R/global-cutoff.R	79.46% <ø> (ø)
R/loadGLIPH.R	33.12% <ø> (ø)
R/runGLIPH.R	88.73% <ø> (ø)
R/utils-output.R	67.74% <ø> (ø)
R/utils-parallel.R	77.77% <ø> (ø)
R/clusterScoring.R	56.33% <33.33%> (-0.31%)	⬇️
R/utils-reference.R	63.10% <0.00%> (+0.60%)	⬆️
R/deNovoTCRs.R	46.64% <0.00%> (ø)
R/plotNetwork.R	5.21% <15.00%> (+0.23%)	⬆️

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