v0.1.19

v0.1.19

• switch to having connection_overrides being a list (#263)
• expose circuit config status (#264)
• Don't read the full node sets file before parsing (#261)

v0.1.18

Improvements

• SONATA sim config: change the default file name for report (#254)
• Faster node sets (#256)

v0.1.17

Added:

• Allow for partial circuit configs (#241)
• Added spatial index accessors for segment and synapse indices (#250)

Fixed:

• Add include(Catch) to CMakeLists.txt. (#248)
• Enable setting the C++ standard. (#247)
• SONATA sim config updates (#245)
• make chemical the default connection type (#242)
• add check for duplicate populations (#239)
• refactor python tests so they are not in a monolithic file (#238)
• Fix get_population_names in README.rst (#235)
• update github actions

v0.1.16

Fixed:

• Fix #226 for empty selections (#232)

v0.1.15

Added:

• Parse metadata and beta_features sections in SimulationConfig (#224)
• SimulationConfig parser: add modifications properties in conditions section (#228)
• make nodes/edges paths files available through PopulationProperties (#230)

Fixed:

• Updates on the SimulationConfig parser (#227)
• don't make many small reads via HighFive/hdf5 (#226)
• Bump pybind11 from v2.5.0 to v2.10.0; supports python 3.11 (#223)
• fix report files not respecting the output path (#222)

v0.1.14

Added

• Parse synapse mod variables in conditions/mechanisms section (#217)

v0.1.13

Added:

• Parse SimulationConfig #197, #203, #207, #208, #210, others

Fixed:

• throw if biophysical_neuron_models_dir is missing for biophysical population (#206)
• for biophysical node populations, don't raise error if alternate_morphologies exists (#209)

v0.1.12

Added:

• Add a check when feeding a directory path to readFile (#188)
• Add support for IO-blocks (#183)

Fixed:

• Bump HighFive to v2.4.0 (#190); fixes errors on archs: aarch64, s390x and ppc64le
• Update hdf5 to 1.12.1 in linux wheel building (#191)
• add -Wp,-D_GLIBCXX_ASSERTIONS, to more likely find out of bounds memory access
• Improve memory operations + NodeID-ElementID mapping bindings (#179)

v0.1.11: 10 Feb 2022

Fixed:

• Prefer building Release mode for python wheels, can control with SONATA_BUILD_TYPE (#176)
• Only do a single read when getting a report frame (#174)

v0.1.10: 15 Dec 2021

Added:

• Have the shim module document functionality (#162)
• added simulation config implementation (#158)
• reporting getNodeIdElementIdMapping function(#168)
• getTimes inside SpikeReader::Population (#169)

Fixed:

• move to C++14 (#159)
• Exclude musllinux wheels building
• Update HighFive submodule to latest 2.3.1 (#156)
• update to new pybind11::mkdocs method (#173)
• switch away from nose for test discovery (#172)