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Add command line parser#6

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Redmar-van-den-Berg wants to merge 2 commits intoBiodataAnalysisGroup:masterfrom
Redmar-van-den-Berg:master
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Add command line parser#6
Redmar-van-den-Berg wants to merge 2 commits intoBiodataAnalysisGroup:masterfrom
Redmar-van-den-Berg:master

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@Redmar-van-den-Berg
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@Redmar-van-den-Berg Redmar-van-den-Berg commented Aug 2, 2023

I was trying to benchmark UMIc to compare it with our own UMI deduplication tool HUMID, but UMIc runs for a long time, even on test data.

Is there a way to speed up UMIc so it can be used on big (200M reads) datasets? For example, by disabling consensus calling?

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