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Bump dependencies and test Python 3.12 through 3.14 #279

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Bump dependencies and test Python 3.12 through 3.14 #279

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6 changes: 3 additions & 3 deletions .github/workflows/tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ "3.11", "3.9" ]
python-version: [ "3.9", "3.11", "3.12", "3.13", "3.14" ]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
Expand All @@ -37,7 +37,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ "3.11", "3.9" ]
python-version: [ "3.9", "3.11", "3.12", "3.13", "3.14" ]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
Expand All @@ -61,7 +61,7 @@ jobs:
strategy:
matrix:
os: [ ubuntu-latest ]
python-version: [ "3.11", "3.9" ]
python-version: [ "3.9", "3.11", "3.12", "3.13", "3.14" ]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
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14 changes: 9 additions & 5 deletions requirements.txt
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@@ -1,7 +1,9 @@
pandas==2.0.3
pandas>=2.2.3
tqdm==4.66.3
SPARQLWrapper
tox
requests
click
matplotlib
seaborn==0.13.0
plotly==5.18.0
Expand All @@ -12,14 +14,16 @@ networkx
xlrd>=2.0.1
neo4j>=5.14
pytest==8.1.1
numpy==1.24.4
numpy>=1.26.0
rdflib==7.0.0
xgboost==1.7.4
tabulate==0.8.9
xgboost>=2.0.0
parmap==1.6.0
scipy==1.10.1
scikit-learn==1.1.3
scipy>=1.11.0
scikit-learn>=1.3.0
shexer==2.5.9
bioregistry==0.11.10
neomodel==5.4.5
py4cytoscape==1.12.0
neomodel>=5.4.0
gprofiler-official==1.0.0
16 changes: 10 additions & 6 deletions setup.cfg
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Expand Up @@ -41,6 +41,9 @@ classifiers =
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: 3.13
Programming Language :: Python :: 3.14
Programming Language :: Python :: 3 :: Only
# TODO add your topics from the Trove controlled vocabulary (see https://pypi.org/classifiers)
keywords =
Expand All @@ -52,7 +55,7 @@ keywords =

[options]
install_requires =
pandas==2.0.3
pandas>=2.2.3
tqdm==4.66.3
SPARQLWrapper
requests
Expand All @@ -66,13 +69,14 @@ install_requires =
networkx
xlrd>=2.0.1
neo4j>=5.14
numpy==1.24.4
pytest==8.1.1
numpy>=1.26.0
rdflib==7.0.0
tabulate==0.8.9
xgboost==1.7.4
xgboost>=2.0.0
parmap==1.6.0
scipy==1.10.1
scikit-learn==1.1.3
rdflib==7.0.0
scipy>=1.11.0
scikit-learn>=1.3.0
shexer==2.5.9
bioregistry==0.11.10
neomodel==5.4.5
Expand Down
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