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update requirement versions for security risks #892

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Merged
saramonzon merged 3 commits into from
Jun 24, 2026
Merged

update requirement versions for security risks #892

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67b52ba
update requirement versions for security risks
saramonzon Jun 23, 2026
bad3b0c
update changelog
saramonzon Jun 23, 2026
d532a2f
update changelog
saramonzon Jun 23, 2026
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -37,6 +37,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),

### Requirements

- Pinned dependencies to exact versions and updated vulnerable packages for secure, reproducible installations [BU-ISCIII/relecov-tools#892](https://github.com/BU-ISCIII/relecov-tools/pull/892)

## [1.8.0] - 2026-27-02 : <https://github.com/BU-ISCIII/relecov-tools/releases/tag/v1.8.0>

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40 changes: 21 additions & 19 deletions requirements.txt
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@@ -1,19 +1,21 @@
click
questionary
jsonschema
packaging
prompt_toolkit>=3.0.3
rich>=10.0.0
requests==2.27.1
paramiko>=2.10.1
pyyaml==6.0.1
openpyxl>=3.1.2
ena-upload-cli
bio==1.4.0
xlsxwriter==3.2.0
bs4==0.0.2
tabulate
pandas
jinja2>=3.0.0
semantic_version
geopy
biopython==1.87
click==8.4.1
# Newer releases currently hard-pin vulnerable lxml/pytest versions.
ena-upload-cli==0.6.2
geopy==2.4.1
Jinja2==3.1.6
jsonschema==4.26.0
# Security override for ena-upload-cli's otherwise unbounded lxml dependency.
lxml==6.1.1
mysql-connector-python==9.7.0
numpy==2.2.6
openpyxl==3.1.5
pandas==2.3.3
paramiko==5.0.0
PyYAML==6.0.3
questionary==2.1.1
requests==2.34.2
rich==15.0.0
semantic-version==2.10.0
tabulate==0.10.0
XlsxWriter==3.2.9
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