Merge pull request #1467 from BRCAChallenge/automate_spliceai

Moved the splice AI output VCF file from the discard list to the keep…
BRCAChallenge · Oct 10, 2023 · 304f403 · 304f403
2 parents 795cf62 + 26091dd
commit 304f403
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 1 deletion.
diff --git a/pipeline/workflow/tarball_files_discard_list.txt b/pipeline/workflow/tarball_files_discard_list.txt
@@ -5,7 +5,6 @@
 ./release/artifacts/bayesdel.vcf
 ./release/artifacts/BICready.vcf
 ./release/artifacts/BIC.vcf
-./release/artifacts/variants_with_splice_ai.vcf
 ./release/artifacts/built.tsv
 ./release/artifacts/built_with_bayesdel.tsv
 ./release/artifacts/built_with_spliceai.tsv

diff --git a/pipeline/workflow/tarball_files_keep_list.txt b/pipeline/workflow/tarball_files_keep_list.txt
@@ -22,6 +22,7 @@
 ./release/artifacts/missing_reports.log
 ./release/artifacts/reports.tsv
 ./release/artifacts/variant_merging.log
+./release/artifacts/variants_with_splice_ai.vcf
 ./release/artifacts/victor_annotation.log
 ./release/artifacts/wrong_genome_coors/1000_Genomes_wrong_genome_coor.vcf
 ./release/artifacts/wrong_genome_coors/BIC_wrong_genome_coor.vcf