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Using full haplotypes in BAM files

Status: Open.

#82 In BDI-pathogens/phyloscanner;

· RubenMarchau opened on Nov 10, 2025

Use of Python2

Status: Open.

#81 In BDI-pathogens/phyloscanner;

· sassy-crick opened on Jan 15, 2025

Please consider providing an official Dockerfile and docker container for this tool

Status: Open.

#80 In BDI-pathogens/phyloscanner;

· Masterxilo opened on Sep 28, 2024

TypeError: object of type 'NoneType' has no len()

Status: Open.

#79 In BDI-pathogens/phyloscanner;

· MTDouglas opened on Sep 19, 2024

RAxML failing without error message

Status: Open.

#71 In BDI-pathogens/phyloscanner;

· ChrisHIV opened on Nov 17, 2022

Bootstrapping trees 1st part

Status: Open.

#60 In BDI-pathogens/phyloscanner;

· evandiego83 opened on Jan 22, 2021

Deal with trees with no branch lengths

enhancement

Status: Open.

#32 In BDI-pathogens/phyloscanner;

· mdhall272 opened on Aug 29, 2018

Make the consensus files an option

enhancement

Status: Open.

#19 In BDI-pathogens/phyloscanner;

· ChrisHIV opened on Sep 13, 2017

Add --ignore-duplicates option

enhancement

Status: Open.

#16 In BDI-pathogens/phyloscanner;

· ChrisHIV opened on Aug 15, 2017

Improve the display of how it was called

enhancement

Status: Open.

#15 In BDI-pathogens/phyloscanner;

· ChrisHIV opened on Aug 10, 2017