Tried installing pandoc with sudo #102
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| name: Python Package using Conda | ||
| on: [push] | ||
| jobs: | ||
| build-linux: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| max-parallel: 5 | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Python 3.8 | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: Add conda to system path | ||
| run: | | ||
| # $CONDA is an environment variable pointing to the root of the miniconda directory | ||
| echo $CONDA/bin >> $GITHUB_PATH | ||
| echo "Pip is at $(which pip)" | ||
| echo $CONDA | ||
| echo $GITHUB_PATH | ||
| - name: pip cache | ||
| uses: actions/cache@v2 | ||
| id: cache | ||
| with: | ||
| path: /usr/share/miniconda/lib/python3.8/site-packages/* | ||
| key: ${{ runner.os }}-condapip-${{ secrets.CACHE_VERSION }}-${{ hashFiles('requirements.txt') }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-condapip- | ||
| ${{ runner.os }} | ||
| - name: Install conda dependencies | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| echo "Cache miss. Installing dependencies" | ||
| conda install -yq pip numpy scipy h5py sphinx matplotlib pandas networkx cffi jupyter psutil sqlalchemy ipykernel ipywidgets | ||
| - name: Install pip dependencies | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| echo "Cache miss. Installing dependencies" | ||
| echo "Pip is at $(which pip)" | ||
| echo "Env python location: ${{ env.pythonLocation}}" | ||
| pip install recommonmark sphinx-rtd-theme nbsphinx mkdocs markdown commonmark | ||
| - name: Install BBN dependencies | ||
| run: | | ||
| export GIT_LFS_SKIP_SMUDGE=1 | ||
| pip install git+https://github.com/BBN-Q/bbndb.git | ||
| pip install git+https://github.com/BBN-Q/QGL.git@develop | ||
| pip install git+https://github.com/spatialaudio/nbsphinx.git@master | ||
| pip install pyvisa coveralls scikit-learn pyusb future python-usbtmc setproctitle progress serial | ||
| export GIT_LFS_SKIP_SMUDGE=0 | ||
| - name: Test with unittest | ||
| run: | | ||
| pip install -e . | ||
| python -m unittest discover -v test | ||
| - name: Build Documentation | ||
| run: | | ||
| sudo apt-get install pandoc | ||
| pip install pandoc | ||
| cd doc | ||
| make html | ||
| cd .. | ||
| - name: Commit documentation changes | ||
| run: | | ||
| echo "Cloning from $GITHUB_SERVER_URL/$GITHUB_REPOSITORY.git" | ||
| git clone $GITHUB_SERVER_URL/$GITHUB_REPOSITORY.git --branch gh-pages --single-branch gh-pages | ||
| cp -r doc/_build/html/* gh-pages/ | ||
| cp -r doc/_build/html auspex_documentation | ||
| cd gh-pages | ||
| git config --local user.email "[email protected]" | ||
| git config --local user.name "GitHub Action" | ||
| git add . | ||
| git commit -m "Update documentation" -a || true | ||
| # The above command will fail if no changes were present, so we ignore | ||
| # the return code. | ||
| - name: Push changes | ||
| uses: ad-m/github-push-action@master | ||
| with: | ||
| branch: gh-pages | ||
| directory: gh-pages | ||
| github_token: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Auspex Documentation | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| path: auspex_documentation | ||
