4.2.0 release

#188 biosecurity and blog email templates

README.md

@@ -8,22 +8,38 @@ Scheduling is handled by Quartz plugin in the app. It works like RSS - it checks
 
 [![Build Status](https://api.travis-ci.com/AtlasOfLivingAustralia/alerts.svg?branch=develop)](https://app.travis-ci.com/github/AtlasOfLivingAustralia/alerts)
 
-# Dev environment set up
+# Dev environment set up 
 
+## Recommend: 
+Go folder ```./docker```, run ```docker-compose up```
+
+Docker-compose runs MySql 8.1 on 3306, smtp4dev on 3000, 2525
+
+
+## Alternative, you can install your own environment
+
+What the docker-compose does:
 1. Install MySql
 1. Log in as root
 1. ```create user 'alerts_user'@'localhost' identified as 'alerts_user';```
 1. ```grant all privileges on *.* to 'alerts_user'@'localhost';```
 1. ```create database alerts```
 1. Create /data/alerts/config/alerts-config.properties
-  1. Use the template in ala-install to get the necessary values
+1. Use the template in ala-install to get the necessary values
 
 
-## To check email sending on local dev environment
+### To check email sending on local dev environment
 Run [smtp4dev](https://github.com/rnwood/smtp4dev) via Docker:
 
 `docker run -p 3000:80 -p 2525:25 -d --name smtpdev rnwood/smtp4dev`
 
-Emails will be sent on SMTP port 2525 (configure sending emails via `postie.enableEmail=true`, `grails.mail.port=2525` and `grails.mail.server=localhost`. Note: emails will not be delivered externally so you don't have to worry about spamming users.
+Emails will be sent on SMTP port 2525 (configure sending emails via `mail.enabled=true`, `grails.mail.port=2525` and `grails.mail.server=localhost`. Note: emails will not be delivered externally so you don't have to worry about spamming users.
 
 You can view all sent emails via the smtp4dev UI on http://localhost:3000/, inlcuding HTML emails which are nicely displayed.
+
+
+### 4.2.0 Release
+
+Change logs
+DB schema update:
+``` ALTER TABLE alerts.query_result MODIFY logs TEXT NULL; ```

build.gradle

@@ -11,7 +11,7 @@
  * rights and limitations under the License.
  */
 buildscript {
-    version "4.0.0"
+    version "4.2.0"
     group "au.org.ala"
 }
 
@@ -25,9 +25,7 @@ plugins {
     id "com.bertramlabs.asset-pipeline"
     id "application"
     id "eclipse"
-
     id "com.gorylenko.gradle-git-properties" version "2.4.1"
-
     id "maven-publish"
 }
 
@@ -105,6 +103,8 @@ dependencies {
     implementation "org.grails.plugins:hibernate5"
     implementation("org.hibernate:hibernate-core:5.6.15.Final")
     implementation "org.hibernate:hibernate-jcache"
+    implementation 'org.codehaus.groovy.modules.http-builder:http-builder:latest.release'
+
     compileOnly("io.micronaut:micronaut-inject-groovy")
 
     implementation "org.grails.plugins:gsp"
@@ -132,7 +132,10 @@ dependencies {
     implementation "org.apache.httpcomponents:httpcore:4.4.16"
 
     implementation 'dk.glasius:external-config:3.1.1'
-    implementation 'org.grails.plugins:mail:3.0.0'
+
+    //Using AWS SES as email provider
+    implementation 'org.grails.plugins:mail:4.0.0'
+    implementation 'au.org.ala:ala-mail:1.0.0-SNAPSHOT'
 
     implementation 'org.grails.plugins:schwartz-monitor:2.0.1.ALA-SNAPSHOT'
     implementation 'org.grails.plugins:quartz:2.0.13'
@@ -156,7 +159,7 @@ dependencies {
     runtimeOnly 'xalan:xalan:2.7.3'
     implementation 'com.jayway.jsonpath:json-path:2.7.0'
     implementation 'com.jayway.jsonpath:json-path-assert:2.7.0'
-    implementation 'au.org.ala.plugins:openapi:1.1.0'
+    implementation 'au.org.ala.plugins:openapi:1.3.0'
 }
 //
 //bootRun {

docker/.env

@@ -0,0 +1 @@
+COMPOSE_PROJECT_NAME=alerts

docker/docker-compose.yml

@@ -0,0 +1,23 @@
+
+services:
+  mysql:
+    container_name: mysql-alerts
+    image: "mysql:8.1.0"
+    environment:
+      MYSQL_DATABASE: 'alerts'
+      MYSQL_USER:  'alerts_user'
+      MYSQL_PASSWORD: 'password'
+      MYSQL_ROOT_PASSWORD: 'password'
+    command: --default-authentication-plugin=mysql_native_password
+    ports:
+      - "3309:3306"
+    expose:
+      - '3309'
+  smtpdev:
+    image: rnwood/smtp4dev
+    ports:
+      - "3000:80"
+      - "2525:25"
+    container_name: smtpdev-alerts
+
+version: "2"

grails-app/assets/stylesheets/alerts.css

@@ -61,4 +61,34 @@ a.btn-ala {
 
 .biosecurityTableColumn {
     width: 20%;
-}
+}
+
+.bioscecrurity-padding {
+    padding: 20px 0px 20px 0px;
+}
+
+.more-button {
+    background-color: #C44D34;
+    cursor: pointer;
+    border: 0;
+    border-radius: 10px;
+    color: white;
+    padding: 11px 19px;
+    text-align: center;
+    display: inline-block;
+    font-size: 16px;
+}
+
+.badge-info {
+    background-color: #17a2b8; /* Adjust the color as needed */
+    color: #fff;
+}
+
+.custom-list {
+    counter-reset: list-counter;
+}
+
+.indented-text {
+    text-indent: -2ch;
+    padding-left: 3ch;
+}

grails-app/conf/application.yml

@@ -1,5 +1,28 @@
 ---
+# mail.enabled: true will send email via a mail server depending on the mail.ses.enabled
+
+# Set mail.ses.enabled true will use AWS SES, it requires the AWS credentials to be set in the environment variables
+# Set false will use the default grails mail plugin, we need to config the mail server and port in grails.mail
+# In dev, email will be posted to Postie docker container, which can be accessed via http://localhost:3000
+
+mail:
+    enabled: true
+    ses:
+        enabled: false
+    details:
+        sender: "[email protected]"
+        alertAddressTitle: "Atlas alerts"
+        infoSender: "[email protected]"
+        infoAddressTitle: "Atlas of Living Australia"
+        defaultResourceName: "Atlas of Living Australia"
+        # forceAllAlertsGetSent results in emails getting sent regardless if data has changed - only use in DEV env
+        forceAllAlertsGetSent: false
+
 grails:
+    #default mail service
+    mail:
+        port: 2525
+        server: localhost
     profile: web
     cache:
         clearAtStartup: true
@@ -115,15 +138,6 @@ security:
         adminRole: ROLE_ADMIN
         uriFilterPattern: ["/","/alaAdmin/*","/testAuth/*","/query/*","/admin/*","/admin/user/*","/admin/user/debug/*","/admin/debug/all","/notification/myAlerts","/notification/changeFrequency","/notification/addMyAlert","/notification/addMyAlert/*","/notification/deleteMyAlert/*","/notification/deleteMyAlert/*","/notification/deleteMyAlertWR/*","/webservice/*","/webservice/createTaxonAlert","/webservice/taxonAlerts","/webservice/createRegionAlert","/webservice/regionAlerts","/webservice/deleteTaxonAlert/*","/webservice/create*","/webservice/createSpeciesGroupRegionAlert","/ws/*","/ws/createTaxonAlert","/ws/taxonAlerts","/ws/createRegionAlert","/ws/regionAlerts","/ws/deleteTaxonAlert/*","/ws/createTaxonRegionAlert","/ws/createSpeciesGroupRegionAlert","/admin/runChecksNow"]
 
-postie:
-    emailSender: "[email protected]"
-    emailAlertAddressTitle: "Atlas alerts"
-    emailInfoAddressTitle: "Atlas of Living Australia"
-    emailInfoSender: "[email protected]"
-    defaultResourceName: "Atlas of Living Australia"
-    enableEmail: false
-    # forceAllAlertsGetSent results in emails getting sent regardless if data has changed - only use in DEV env
-    forceAllAlertsGetSent: false
 ala:
     baseURL: "https://www.ala.org.au"
     userDetailsURL: "https://auth.ala.org.au/userdetails/userDetails/getUserListFull"
@@ -156,6 +170,11 @@ useBlogsAlerts: true
 useCitizenScienceAlerts: true
 biosecurity:
     cronExpression: '0 30 9 ? * WED'
+    query:
+        template:
+            authoritativeList: /occurrences/search?q=species_list_uid:___LISTIDPARAM___&fq=decade:2020&fq=country:Australia&fq=first_loaded_date:[___DATEPARAM___%20TO%20*]&fq=occurrence_date:[___LASTYEARPARAM___%20TO%20*]&sort=first_loaded_date&dir=desc&disableAllQualityFilters=true
+            nonAuthoritativeList: /occurrences/search?q=species_list:___LISTIDPARAM___&fq=decade:2020&fq=country:Australia&fq=first_loaded_date:[___DATEPARAM___%20TO%20*]&fq=occurrence_date:[___LASTYEARPARAM___%20TO%20*]&sort=first_loaded_date&dir=desc&disableAllQualityFilters=true
+        maxRecords: 500
     moreinfo:
         link: https://www.ala.org.au/blogs-news/ala-helps-to-stop-pests-in-their-tracks/
     dir: /data/alerts/emails
@@ -172,7 +191,7 @@ biosecurity:
         lgaField: cl10923
         shape: cl11033:"Namadgi" OR cl11033:"Tidbinbilla" OR cl11033:"Bimberi"
         #shape: spatialObject:9223660
-        eventDateAge: 29
+        eventDateAge: 150
         firstLoadedDateAge: 8
 
 environments:
@@ -182,16 +201,41 @@ environments:
             mail:
                 host: "localhost"
                 port: 1025
-                username: postie.emailSender
+                #username: postie.emailSender
         security:
             cas:
                 appServerName: "http://localhost:8080"
+        userdetails:
+            web:
+                url: https://aws-auth-test-2023.test.ala.org.au/userdetails/
+            api:
+                url: https://api.test.ala.org.au/userdetails/cognito/
+        mail:
+            details:
+                sender: "[email protected]"
+                alertAddressTitle: "Atlas alerts [Dev]"
+                infoAddressTitle: "Atlas of Living Australia [Dev]"
+                infoSender: "[email protected]"
     test:
         grails:
             serverURL: "http://dev.ala.org.au:8080"
+            mail:
+                host: "localhost"
+                port: 25
         security:
             cas:
                 appServerName: "https://auth.ala.org.au"
+        userdetails:
+            web:
+                url: https://aws-auth-test-2023.test.ala.org.au/userdetails/
+            api:
+                url: https://api.test.ala.org.au/userdetails/cognito/
+        mail:
+            details:
+                sender: "[email protected]"
+                alertAddressTitle: "Atlas alerts [Test]"
+                infoAddressTitle: "Atlas of Living Australia [Test]"
+                infoSender: "[email protected]"
     production:
         grails:
             serverURL: "https://auth.ala.org.au/alerts"
@@ -201,6 +245,11 @@ environments:
         security:
             cas:
                 appServerName: "https://auth.ala.org.au"
+        userdetails:
+            web:
+                url: https://auth.ala.org.au/userdetails/
+            api:
+                url: https://api.ala.org.au/userdetails/cognito/
 
 ---
 hibernate:
@@ -229,7 +278,7 @@ dataSource:
         validationQueryTimeout: 10 # seconds (default: -1 i.e. disabled)
         validationInterval: 30000 # milliseconds, default is 30000 (30 seconds)
         removeAbandoned: true # # default: false
-        removeAbandonedTimeout: 300 # seconds (default: 60)
+        removeAbandonedTimeout: 3600 # seconds (default: 60), must be > quartz job duration
         logAbandoned: true # adds some overhead to every borrow from the pool, disable if it becomes a performance issue
         logValidationErrors: true # default: false, logs validation errors at SEVERE
         # NOTE: removeAbandoned: true OR testWhileIdle: true enables the Pool Cleaner. There is a bug with the
@@ -259,9 +308,11 @@ environments:
             username: sa
             password:
             url: jdbc:h2:mem:testDb;LOCK_TIMEOUT=10000;DB_CLOSE_ON_EXIT=FALSE
+        userDetails:
+            url: https://aws-auth-test-2023.test.ala.org.au/userdetails/
     production:
         dataSource:
-            dbCreate: none
+            dbCreate: update
 
 myannotation:
     enabled: false
@@ -270,8 +321,7 @@ webservice:
     jwt: true
     jwt-scopes: "openid users/read"
 
-userDetails:
-    url: https://aws-auth-dev.ala.org.au/userdetails/
+
 
 security:
     cas: