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release candidate v2026-03-13 #267

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190 changes: 115 additions & 75 deletions apollo_sv-base.json
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153 changes: 73 additions & 80 deletions apollo_sv-base.obo
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318 changes: 199 additions & 119 deletions apollo_sv-base.owl
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1,755 changes: 710 additions & 1,045 deletions apollo_sv-full.json
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1,183 changes: 500 additions & 683 deletions apollo_sv-full.obo
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1,824 changes: 925 additions & 899 deletions apollo_sv-full.owl
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1,755 changes: 710 additions & 1,045 deletions apollo_sv.json
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1,183 changes: 500 additions & 683 deletions apollo_sv.obo
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1,824 changes: 925 additions & 899 deletions apollo_sv.owl
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7 changes: 4 additions & 3 deletions src/ontology/imports/dron_import.owl
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Expand Up @@ -6,6 +6,7 @@ Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
Prefix(core:=<http://purl.obolibrary.org/obo/uberon/core#>)
Prefix(pato:=<http://purl.obolibrary.org/obo/pato#>)
Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
Prefix(swrl:=<http://www.w3.org/2003/11/swrl#>)
Expand All @@ -20,9 +21,9 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/dron_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/dron_import.owl>
Annotation(dc:source <http://purl.obolibrary.org/obo/dron/releases/2025-12-19/dron.owl>)
Annotation(owl:versionInfo "2026-03-06")
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/dron_import.owl>
Annotation(dc:source <http://purl.obolibrary.org/obo/dron/releases/2026-03-04/dron.owl>)
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(obo:BFO_0000040))
Declaration(Class(obo:DRON_00000005))
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4 changes: 2 additions & 2 deletions src/ontology/imports/geo_import.owl
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Expand Up @@ -13,10 +13,10 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/geo_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/geo_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/geo_import.owl>
Import(<http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl>)
Import(<http://purl.obolibrary.org/obo/ro/core.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(obo:BFO_0000004))
Declaration(Class(obo:BFO_0000027))
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4 changes: 2 additions & 2 deletions src/ontology/imports/go_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/go_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/go_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/go_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/go/releases/2026-01-23/go.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(<http://purl.obolibrary.org/obo/GO_0007610>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0008150>))
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4 changes: 2 additions & 2 deletions src/ontology/imports/iao_import.owl
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Expand Up @@ -15,9 +15,9 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/iao_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/iao_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/iao_import.owl>
Annotation(dc:source <http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(obo:APOLLO_SV_00000008))
Declaration(Class(obo:APOLLO_SV_00000032))
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4 changes: 2 additions & 2 deletions src/ontology/imports/ido_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/ido_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/ido_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/ido_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
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14 changes: 12 additions & 2 deletions src/ontology/imports/mf_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/mf_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/mf_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/mf_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/MF/2025-07-08/MF.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Expand All @@ -29,6 +29,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000029>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000030>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000031>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000034>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000035>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000038>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000141>))
Expand Down Expand Up @@ -456,6 +457,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000180> <http://purl.ob
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000008> "temporal region"@en)
SubClassOf(<http://purl.obolibrary.org/obo/BFO_0000008> <http://purl.obolibrary.org/obo/BFO_0000003>)
DisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000008> <http://purl.obolibrary.org/obo/BFO_0000015>)
DisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000008> <http://purl.obolibrary.org/obo/BFO_0000035>)

# Class: <http://purl.obolibrary.org/obo/BFO_0000015> (process)

Expand Down Expand Up @@ -647,6 +649,14 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.ob
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000034> "function"@en)
SubClassOf(<http://purl.obolibrary.org/obo/BFO_0000034> <http://purl.obolibrary.org/obo/BFO_0000016>)

# Class: <http://purl.obolibrary.org/obo/BFO_0000035> (process boundary)

AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000179> <http://purl.obolibrary.org/obo/BFO_0000035> "p-boundary")
AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000180> <http://purl.obolibrary.org/obo/BFO_0000035> "ProcessBoundary")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000035> "the boundary between the 2nd and 3rd year of your life."@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000035> "process boundary"@en)
SubClassOf(<http://purl.obolibrary.org/obo/BFO_0000035> <http://purl.obolibrary.org/obo/BFO_0000003>)

# Class: <http://purl.obolibrary.org/obo/BFO_0000038> (one-dimensional temporal region)

AnnotationAssertion(<http://purl.obolibrary.org/obo/BFO_0000179> <http://purl.obolibrary.org/obo/BFO_0000038> "1d-t-region")
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4 changes: 2 additions & 2 deletions src/ontology/imports/ogms_import.owl
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Expand Up @@ -13,9 +13,9 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/ogms_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/ogms_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/ogms_import.owl>
Annotation(dc:source <http://purl.obolibrary.org/obo/ogms/2021-08-19/ogms.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(obo:BFO_0000015))
Declaration(Class(obo:BFO_0000016))
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4 changes: 2 additions & 2 deletions src/ontology/imports/omrse_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/omrse_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/omrse_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/omrse_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/omrse/releases/2026-03-05/omrse.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(<http://purl.obolibrary.org/obo/APOLLO_SV_00000032>))
Declaration(Class(<http://purl.obolibrary.org/obo/APOLLO_SV_00000480>))
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6 changes: 3 additions & 3 deletions src/ontology/imports/ro_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/ro_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/ro_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/ro_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2025-12-17/ro.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
Expand Down Expand Up @@ -447,7 +447,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://www.gen
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "has broad synonym"@en)
AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> "has_broad_synonym")

# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (has cross-reference)
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasDbXref> (database_cross_reference)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) \"NCIT:C41009\"^^xsd:string")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://www.geneontology.org/formats/oboInOwl#hasDbXref> "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.")
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4 changes: 2 additions & 2 deletions src/ontology/imports/uberon_import.owl
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Expand Up @@ -30,9 +30,9 @@ Prefix(ncbitaxon:=<http://purl.obolibrary.org/obo/ncbitaxon#>)


Ontology(<http://purl.obolibrary.org/obo/apollo_sv/imports/uberon_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-06/imports/uberon_import.owl>
<http://purl.obolibrary.org/obo/apollo_sv/releases/2026-03-13/imports/uberon_import.owl>
Annotation(dc:source <http://purl.obolibrary.org/obo/uberon/releases/2025-12-04/uberon.owl>)
Annotation(owl:versionInfo "2026-03-06")
Annotation(owl:versionInfo "2026-03-13")

Declaration(Class(obo:BFO_0000040))
Declaration(Class(obo:UBERON_0000061))
Expand Down
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