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@ChainFiliates ChainFiliates commented Jan 6, 2026

Summary

  • Fix os.execv() not working properly on Windows in spec_runner.py
  • Add Windows fallback for git worktree creation in worktree.py

Changes

spec_runner.py (lines 343-352)

  • Use subprocess.run() on Windows instead of os.execv()
  • os.execv() spawns a new process on Windows instead of replacing current process
  • Properly propagate exit code with sys.exit(result.returncode)

worktree.py (lines 441-506)

  • Add Windows fallback when git worktree add fails
  • Uses: git worktree add --no-checkout + git read-tree -u HEAD
  • Falls back to git reset HEAD + git checkout-index -a -f if needed
  • Proper cleanup on failure at each step

Test plan

Closes #709

Thanks to @Old_Dub for reporting and documenting the Windows compatibility issues.


🤖 Generated with Claude Code

Summary by CodeRabbit

  • Bug Fixes

    • Better Windows reliability for repository worktree operations via an automatic fallback path when initial attempts fail.
    • Consistent build-run behavior on Windows by changing how the build script is launched.
    • Improved cross-platform detection of running processes to reduce stale lock issues.
  • Tests

    • Tests now use platform-safe temporary directories and system temp locations for greater compatibility.
  • Chores

    • Hook installation skips chmod on Windows to avoid permission issues.

✏️ Tip: You can customize this high-level summary in your review settings.

Addresses issues reported in AndyMik90#709:

1. spec_runner.py: Replace os.execv() with subprocess.run() on Windows
   - os.execv() doesn't replace the process on Windows, it spawns a new one
   - Use subprocess.run() with proper exit code propagation on Windows
   - Keep os.execv() for Unix systems (original behavior)

2. worktree.py: Add Windows fallback for git worktree creation
   - Standard `git worktree add` can fail on Windows due to filesystem issues
   - Fallback uses: git worktree add --no-checkout + git read-tree -u HEAD
   - If read-tree fails, falls back to reset + checkout-index -a -f
   - Proper cleanup on failure at each step

Closes AndyMik90#709

Co-authored-by: Old_Dub <[email protected]>

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
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coderabbitai bot commented Jan 6, 2026

📝 Walkthrough

Walkthrough

Adds Windows-specific recovery and detection: git worktree creation gains a Windows fallback sequence (prune, create dir, add --no-checkout, read-tree, checkout-index fallback), process execution on Windows uses subprocess.run instead of os.execv, and PID liveness checks become cross-platform.

Changes

Cohort / File(s) Summary
Git Worktree Windows Fallback
apps/backend/core/worktree.py
On git worktree add failure, attempt a Windows-only recovery: prune partial state, create the worktree dir, git worktree add --no-checkout, run git read-tree -u HEAD (and fallback to git reset + git checkout-index if needed). Non-Windows behavior unchanged.
Process Execution (runner)
apps/backend/runners/spec_runner.py
On Windows, spawn the run command with subprocess.run() and sys.exit() with its return code; retain os.execv() on Unix. Adds subprocess import and platform-conditional branch.
Process liveness detection & locks
apps/backend/core/workspace/models.py, apps/backend/core/workspace/git_utils.py
Introduce cross-platform PID checks (helper _is_process_running using ctypes.OpenProcess on win32, os.kill(..., 0) on POSIX) and replace localized os.kill checks in lock handling. Minor import additions (sys, tempfile elsewhere).
Tests / Temp dirs
apps/backend/integrations/graphiti/test_graphiti_memory.py, apps/backend/runners/github/test_context_gatherer.py
Replace hard-coded /tmp paths with tempfile-based temp dirs or tempfile.gettempdir() for cross-platform test compatibility.
Hook install on Windows
apps/backend/merge/install_hook.py
Skip chmod on Windows (preserve permissions) and print a Windows-specific message; unchanged on other platforms.

Sequence Diagram(s)

sequenceDiagram
    rect rgb(240,248,255)
    participant Caller
    participant Git as "git CLI"
    participant FS as "Filesystem"
    participant Logger
    end

    Caller->>Git: git worktree add -b <branch> <path> <base>
    alt success
        Git-->>Caller: success
        Caller->>Logger: log success
    else failure (Windows)
        Caller->>Logger: log initial failure + trigger Windows fallback
        Caller->>Git: git worktree prune
        Caller->>FS: mkdir -p <path>
        Caller->>Git: git worktree add --no-checkout -b <branch> <path> <base>
        alt add success
            Caller->>Git: git -C <path> read-tree -u HEAD
            alt read-tree success
                Caller->>Logger: log Windows fallback complete
            else read-tree failure
                Caller->>Git: git -C <path> reset --hard
                Caller->>Git: git -C <path> checkout-index -a -f
                Git-->>Caller: fallback result
                Caller->>Logger: log final status
            end
        else add failure
            Git-->>Caller: failure -> raise WorktreeError (non-Windows behavior retained)
        end
    end
Loading

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Possibly related PRs

Suggested labels

bug, area/backend, os/windows, 🔄 Checking, size/M

Suggested reviewers

  • AndyMik90

Poem

🐰🛠️ I hopped through logs and Windows vines,
Pruned the mess and built new lines.
read-tree hummed and checkout sang,
subprocess danced where exec once sprang.
A rabbit’s patch — now cross-platform fine.

Pre-merge checks and finishing touches

❌ Failed checks (1 warning)
Check name Status Explanation Resolution
Linked Issues check ⚠️ Warning The PR addresses primary coding requirements from issue #709: Windows subprocess.run fix in spec_runner.py, git worktree fallback in worktree.py, process detection fixes, and cross-platform test path handling. However, critical model ID fixes (sonnet model ID update and .env comment-out) from the issue are not present in this PR's changes. The PR is missing model ID fixes documented in issue #709: update claude-sonnet-4-5-20241022 to claude-sonnet-4-5-20250929 in phase_config.py and comment out stale .env overrides. These are essential to resolve the full scope of issue #709.
✅ Passed checks (4 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title 'fix: Windows compatibility for process execution and git worktree' accurately summarizes the main changes: Windows-specific fixes for process execution (subprocess.run in spec_runner.py) and git worktree creation (worktree.py fallback), plus supporting cross-platform improvements in process checking and test utilities.
Out of Scope Changes check ✅ Passed The changes in worktree.py, spec_runner.py, git_utils.py, models.py, install_hook.py, and test files are all directly scoped to Windows compatibility. However, the absence of model ID fixes that are explicitly required by issue #709 represents incomplete scope coverage rather than out-of-scope additions.
Docstring Coverage ✅ Passed Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
✨ Finishing touches
  • 📝 Generate docstrings

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Summary of Changes

Hello @ChainFiliates, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request significantly enhances the application's compatibility and reliability on Windows operating systems. It resolves critical issues related to process execution, ensuring that commands are run correctly, and provides a resilient solution for Git worktree creation, which previously encountered problems in Windows environments. The changes aim to provide a consistent and stable experience for users on all supported platforms.

Highlights

  • Windows Process Execution Fix: Addressed an issue where os.execv() did not behave as expected on Windows, causing incorrect process execution in spec_runner.py. The fix now uses subprocess.run() for Windows to ensure proper process replacement and exit code propagation.
  • Git Worktree Windows Compatibility: Implemented a robust fallback mechanism for git worktree add failures specifically on Windows within worktree.py. This workaround involves creating the worktree without checkout, then manually populating it using git read-tree or git checkout-index, with comprehensive cleanup on failure.
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🎉 Thanks for your first PR!

A maintainer will review it soon. Please make sure:

  • Your branch is synced with develop
  • CI checks pass
  • You've followed our contribution guide

Welcome to the Auto Claude community!

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Code Review

This pull request introduces important compatibility fixes for Windows. The change in spec_runner.py to use subprocess.run is a solid platform-specific solution. The extensive fallback logic for git worktree in worktree.py is well-thought-out and handles multiple failure scenarios. I've added a couple of suggestions to improve the maintainability and style of the new code in worktree.py by moving an import and refactoring duplicated cleanup logic.

)
# Windows workaround: git worktree add can fail due to filesystem/path issues
# Use alternative approach: create worktree without checkout, then manually checkout
import sys
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medium

For better code organization and adherence to Python's style guide (PEP 8), it's recommended to move all imports to the top of the file. This import sys statement should be moved to the top-level imports section of the file.

References
  1. PEP 8, the style guide for Python code, recommends that all imports should be at the top of the file, just after any module comments and docstrings. (link)

Comment on lines +474 to +475
shutil.rmtree(worktree_path, ignore_errors=True)
self._run_git(["worktree", "prune"])
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medium

This cleanup logic is duplicated in a few places within this Windows-specific workaround (here, and at lines 496-497). The logic at lines 452-454 is also effectively the same, as shutil.rmtree(..., ignore_errors=True) handles non-existent paths.

To improve maintainability and adhere to the DRY (Don't Repeat Yourself) principle, you could extract this logic into a private helper method within the WorktreeManager class.

For example:

def _cleanup_failed_worktree(self, worktree_path: Path):
    """Clean up a partially created worktree directory and prune git worktrees."""
    shutil.rmtree(worktree_path, ignore_errors=True)
    self._run_git(["worktree", "prune"])

You could then replace the cleanup blocks with a single call: self._cleanup_failed_worktree(worktree_path).

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Actionable comments posted: 3

🤖 Fix all issues with AI Agents
In @apps/backend/core/worktree.py:
- Around line 442-444: Move the local "import sys" out of the error handler and
add it to the module-level imports alongside the other standard library imports
at the top of worktree.py; remove the in-function "import sys" statement (the
one shown in the error-handling block around the git worktree workaround) so all
uses of sys reference the top-level import.

In @apps/backend/runners/spec_runner.py:
- Around line 344-352: Add a return type hint to the entry function by changing
the signature of main() to main() -> None, and wrap the Windows branch call to
subprocess.run(run_cmd) in a try-except that catches OSError and
FileNotFoundError (and optionally other Exceptions), logging the error with
debug_error("spec_runner", ...) and exiting with a non-zero code (sys.exit(1))
if the call fails; keep the existing sys.platform check, run_cmd variable, and
the Unix os.execv(sys.executable, run_cmd) branch unchanged.
📜 Review details

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between e3d72d6 and 27f3c8f.

📒 Files selected for processing (2)
  • apps/backend/core/worktree.py
  • apps/backend/runners/spec_runner.py
🧰 Additional context used
📓 Path-based instructions (2)
apps/backend/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

apps/backend/**/*.py: Always use the Claude Agent SDK (claude-agent-sdk package) for all AI interactions, never use the Anthropic API directly
Use the create_client() function from apps/backend/core/client.py to instantiate Claude SDK clients, not direct ClaudeSDKClient initialization

Files:

  • apps/backend/runners/spec_runner.py
  • apps/backend/core/worktree.py

⚙️ CodeRabbit configuration file

apps/backend/**/*.py: Focus on Python best practices, type hints, and async patterns.
Check for proper error handling and security considerations.
Verify compatibility with Python 3.12+.

Files:

  • apps/backend/runners/spec_runner.py
  • apps/backend/core/worktree.py
apps/backend/core/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

Implement dynamic command allowlisting based on detected project stack using core/security.py for bash command validation

Files:

  • apps/backend/core/worktree.py
🧠 Learnings (1)
📚 Learning: 2025-12-30T16:38:36.314Z
Learnt from: CR
Repo: AndyMik90/Auto-Claude PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-30T16:38:36.314Z
Learning: Use git worktrees for isolated agent builds with branches following the naming pattern `auto-claude/{spec-name}`

Applied to files:

  • apps/backend/core/worktree.py
🔇 Additional comments (1)
apps/backend/runners/spec_runner.py (1)

50-50: LGTM: Standard library import added for Windows compatibility.

The subprocess import is correctly placed and needed for the Windows-specific process execution fallback.

Comment on lines +442 to +444
# Windows workaround: git worktree add can fail due to filesystem/path issues
# Use alternative approach: create worktree without checkout, then manually checkout
import sys
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🧹 Nitpick | 🔵 Trivial

Minor style improvement: Move sys import to module level.

The sys import is placed inside the error handler. While functional, it's more conventional to import sys at the module level (near line 17-24 where other standard library imports are located).

🔎 Proposed refactor

Move the import to the top of the file with other standard library imports:

 import asyncio
 import os
 import re
 import shutil
 import subprocess
+import sys
 from dataclasses import dataclass
 from datetime import datetime
 from pathlib import Path

Then remove the local import at line 444:

         if result.returncode != 0:
             # Windows workaround: git worktree add can fail due to filesystem/path issues
             # Use alternative approach: create worktree without checkout, then manually checkout
-            import sys
-
             if sys.platform == "win32":
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
# Windows workaround: git worktree add can fail due to filesystem/path issues
# Use alternative approach: create worktree without checkout, then manually checkout
import sys
# Windows workaround: git worktree add can fail due to filesystem/path issues
# Use alternative approach: create worktree without checkout, then manually checkout
if sys.platform == "win32":
🤖 Prompt for AI Agents
In @apps/backend/core/worktree.py around lines 442 - 444, Move the local "import
sys" out of the error handler and add it to the module-level imports alongside
the other standard library imports at the top of worktree.py; remove the
in-function "import sys" statement (the one shown in the error-handling block
around the git worktree workaround) so all uses of sys reference the top-level
import.

Comment on lines +446 to +506
if sys.platform == "win32":
print(
f"Standard worktree creation failed, trying Windows workaround..."
)

# Clean up any partial state from failed attempt
if worktree_path.exists():
shutil.rmtree(worktree_path, ignore_errors=True)
self._run_git(["worktree", "prune"])

# Step 1: Create the worktree directory manually
worktree_path.mkdir(parents=True, exist_ok=True)

# Step 2: Register worktree without checking out files
result = self._run_git(
[
"worktree",
"add",
"--no-checkout",
"-b",
branch_name,
str(worktree_path),
start_point,
]
)

if result.returncode != 0:
# Clean up on failure
shutil.rmtree(worktree_path, ignore_errors=True)
self._run_git(["worktree", "prune"])
raise WorktreeError(
f"Failed to create worktree for {spec_name} (Windows fallback): {result.stderr}"
)

# Step 3: Use git read-tree to read the tree into the index
result = self._run_git(
["read-tree", "-u", "HEAD"], cwd=worktree_path
)

if result.returncode != 0:
# Try alternative: checkout-index approach
# First reset the index to HEAD
self._run_git(["reset", "HEAD"], cwd=worktree_path)
# Then checkout all files from the index
result = self._run_git(
["checkout-index", "-a", "-f"], cwd=worktree_path
)

if result.returncode != 0:
# Clean up on failure
shutil.rmtree(worktree_path, ignore_errors=True)
self._run_git(["worktree", "prune"])
raise WorktreeError(
f"Failed to checkout files in worktree for {spec_name}: {result.stderr}"
)

print(f"Windows workaround succeeded for worktree: {worktree_path.name}")
else:
raise WorktreeError(
f"Failed to create worktree for {spec_name}: {result.stderr}"
)
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⚠️ Potential issue | 🔴 Critical

🧩 Analysis chain

🏁 Script executed:

# First, verify the worktree creation logic
rg -n "worktree.*add" --type=py apps/backend/core/worktree.py

# Check for platform-specific handling
rg -n 'sys\.platform.*win32' --type=py apps/backend/

Repository: AndyMik90/Auto-Claude

Length of output: 810


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# Check if security.py is being used for command validation
rg -n "security\|allowlist\|_run_git" --type=py apps/backend/core/worktree.py | head -50

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Length of output: 47


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# Inspect the worktree.py file structure to understand the implementation
wc -l apps/backend/core/worktree.py

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Length of output: 98


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# Look at the _run_git method implementation
rg -A 20 "def _run_git" --type=py apps/backend/core/worktree.py

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cat apps/backend/core/security.py | head -100

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rg -A 40 "def _run_git" --type=py apps/backend/core/worktree.py

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# Check the full context around the Windows workaround section
sed -n '430,510p' apps/backend/core/worktree.py

Repository: AndyMik90/Auto-Claude

Length of output: 3458


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# Search for any security or allowlist imports/usage in worktree.py
rg -n "import|from.*security\|allowlist\|validate" --type=py apps/backend/core/worktree.py | head -30

Repository: AndyMik90/Auto-Claude

Length of output: 271


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rg -n "async|await" --type=py apps/backend/core/worktree.py

Repository: AndyMik90/Auto-Claude

Length of output: 127


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# Check the class definition and method signatures for type hints
rg -B 5 "def " --type=py apps/backend/core/worktree.py | head -50

Repository: AndyMik90/Auto-Claude

Length of output: 1751


Implement command allowlisting for git operations per security guidelines.

The Windows workaround logic is structurally sound with proper cleanup and error handling at each step. However, this code violates the mandatory coding guideline requiring dynamic command allowlisting in apps/backend/core/**/*.py files.

Critical Issue: The _run_git method executes all git commands (worktree, prune, read-tree, reset, checkout-index) without security validation. The required core/security.py module must be created and integrated to validate all bash commands before execution. This is mandatory before this change can be merged.

Additionally, ensure:

  • Type hints are complete (currently good: args: list[str], cwd: Path | None, return type)
  • Python 3.12+ compatibility (syntax looks compatible)
  • Proper async/await patterns if _merge_lock is used

Comment on lines +344 to +352
# Execute run.py - replace current process on Unix, use subprocess on Windows
if sys.platform == "win32":
# On Windows, os.execv() doesn't replace the process - it spawns a new one
# and the original continues. Use subprocess.run() instead.
result = subprocess.run(run_cmd)
sys.exit(result.returncode)
else:
# On Unix, os.execv() properly replaces the current process
os.execv(sys.executable, run_cmd)
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⚠️ Potential issue | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

# First, let's check the file exists and read the relevant lines
wc -l apps/backend/runners/spec_runner.py

Repository: AndyMik90/Auto-Claude

Length of output: 104


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# Read the code around the specified lines with context
sed -n '340,360p' apps/backend/runners/spec_runner.py | cat -n

Repository: AndyMik90/Auto-Claude

Length of output: 1133


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# Check subprocess usage in the entire file
rg -n "subprocess" apps/backend/runners/spec_runner.py -A 3 -B 1

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# Check for error handling and type hints
rg -n "import|def|try|except|raise" apps/backend/runners/spec_runner.py | head -40

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sed -n '100,360p' apps/backend/runners/spec_runner.py | cat -n

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rg -n "def |->|: " apps/backend/runners/spec_runner.py | head -20

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rg -n "from (spec|review|debug|phase_config|ui) import" apps/backend/runners/spec_runner.py

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rg -n "claude.*sdk|ClientSDK|create_client" apps/backend/ --type=py

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Repository: AndyMik90/Auto-Claude

Length of output: 1204


🏁 Script executed:

# Check subprocess.run in spec_runner specifically - is error handling missing?
sed -n '345,355p' apps/backend/runners/spec_runner.py

Repository: AndyMik90/Auto-Claude

Length of output: 530


Add type hints to main() function and handle subprocess.run() errors.

The function signature def main(): is missing a return type hint. Other entry-point functions in the codebase use -> None: or -> int: to comply with coding guidelines for Python best practices and type hints.

Additionally, subprocess.run() on Windows (line 348) lacks error handling. The call can raise OSError, FileNotFoundError, or other exceptions that will crash the process without proper cleanup. Add a try-except block to catch subprocess errors and propagate them gracefully.

Example fix:

def main() -> None:
    # ... existing code ...
    if sys.platform == "win32":
        try:
            result = subprocess.run(run_cmd)
            sys.exit(result.returncode)
        except (OSError, FileNotFoundError) as e:
            debug_error("spec_runner", f"Failed to execute build: {e}")
            sys.exit(1)

The platform-specific logic (subprocess.run on Windows, os.execv on Unix) and stdin/stdout inheritance are correct.

🤖 Prompt for AI Agents
In @apps/backend/runners/spec_runner.py around lines 344 - 352, Add a return
type hint to the entry function by changing the signature of main() to main() ->
None, and wrap the Windows branch call to subprocess.run(run_cmd) in a
try-except that catches OSError and FileNotFoundError (and optionally other
Exceptions), logging the error with debug_error("spec_runner", ...) and exiting
with a non-zero code (sys.exit(1)) if the call fails; keep the existing
sys.platform check, run_cmd variable, and the Unix os.execv(sys.executable,
run_cmd) branch unchanged.

os.kill(pid, 0) doesn't work on Windows - it throws OSError instead
of checking if a process exists. This could cause lock files to be
incorrectly treated as stale, leading to race conditions.

Fix: Use ctypes OpenProcess on Windows to properly check if a
process is running.

Files changed:
- git_utils.py: Updated is_process_running() function
- models.py: Added _is_process_running() helper, updated MergeLock
  and SpecNumberLock classes

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
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Actionable comments posted: 1

🤖 Fix all issues with AI agents
In @apps/backend/core/workspace/git_utils.py:
- Around line 361-383: Models.py contains a duplicate _is_process_running
implementation; delete that function and import the shared implementation from
git_utils instead. Replace the local definition with a single import line like
`from ..git_utils import is_process_running as _is_process_running` (or import
is_process_running and update local call sites to use is_process_running) so all
callers in models.py reference the canonical function in git_utils (function
name: is_process_running) and remove the duplicate code.
📜 Review details

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Reviewing files that changed from the base of the PR and between 27f3c8f and 6c65046.

📒 Files selected for processing (2)
  • apps/backend/core/workspace/git_utils.py
  • apps/backend/core/workspace/models.py
🧰 Additional context used
📓 Path-based instructions (2)
apps/backend/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

apps/backend/**/*.py: Always use the Claude Agent SDK (claude-agent-sdk package) for all AI interactions, never use the Anthropic API directly
Use the create_client() function from apps/backend/core/client.py to instantiate Claude SDK clients, not direct ClaudeSDKClient initialization

Files:

  • apps/backend/core/workspace/git_utils.py
  • apps/backend/core/workspace/models.py

⚙️ CodeRabbit configuration file

apps/backend/**/*.py: Focus on Python best practices, type hints, and async patterns.
Check for proper error handling and security considerations.
Verify compatibility with Python 3.12+.

Files:

  • apps/backend/core/workspace/git_utils.py
  • apps/backend/core/workspace/models.py
apps/backend/core/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

Implement dynamic command allowlisting based on detected project stack using core/security.py for bash command validation

Files:

  • apps/backend/core/workspace/git_utils.py
  • apps/backend/core/workspace/models.py
🔇 Additional comments (1)
apps/backend/core/workspace/models.py (1)

130-130: LGTM! Cross-platform process checks correctly integrated.

The usage of _is_process_running in both MergeLock.__enter__ and SpecNumberLock.__enter__ correctly handles stale lock detection across platforms. The pattern of checking process liveness before removing locks is sound.

Once the code duplication is resolved (by importing from git_utils.py), this will provide reliable Windows compatibility for lock management.

Also applies to: 213-213

Comment on lines 361 to +383
def is_process_running(pid: int) -> bool:
"""Check if a process with the given PID is running."""
import os

try:
os.kill(pid, 0)
return True
except (OSError, ProcessLookupError):
import sys

if sys.platform == "win32":
# On Windows, os.kill(pid, 0) doesn't work - it throws OSError
# Use ctypes to call OpenProcess instead
import ctypes

kernel32 = ctypes.windll.kernel32
PROCESS_QUERY_LIMITED_INFORMATION = 0x1000
handle = kernel32.OpenProcess(PROCESS_QUERY_LIMITED_INFORMATION, False, pid)
if handle:
kernel32.CloseHandle(handle)
return True
return False
else:
try:
os.kill(pid, 0)
return True
except (OSError, ProcessLookupError):
return False
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🛠️ Refactor suggestion | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

# First, let's verify the duplication claim - check for is_process_running in both files
rg -n "def.*is_process_running|def.*_is_process_running" apps/backend/core/workspace/ --type=py

Repository: AndyMik90/Auto-Claude

Length of output: 235


🏁 Script executed:

# Check models.py file around lines 15-36 to see the function
cat -n apps/backend/core/workspace/models.py | head -50

Repository: AndyMik90/Auto-Claude

Length of output: 1721


🏁 Script executed:

# Check git_utils.py around lines 361-383
cat -n apps/backend/core/workspace/git_utils.py | sed -n '355,390p'

Repository: AndyMik90/Auto-Claude

Length of output: 1342


🏁 Script executed:

# Check if there's an export/alias at line 590 in git_utils.py
cat -n apps/backend/core/workspace/git_utils.py | sed -n '585,595p'

Repository: AndyMik90/Auto-Claude

Length of output: 542


🏁 Script executed:

# Look for all usages of is_process_running and _is_process_running in the workspace module
rg -n "is_process_running|_is_process_running" apps/backend/core/workspace/ --type=py -B 2 -A 2

Repository: AndyMik90/Auto-Claude

Length of output: 3094


🏁 Script executed:

# Check if there are any imports between models.py and git_utils.py
rg -n "from.*git_utils|import.*git_utils" apps/backend/core/workspace/ --type=py

Repository: AndyMik90/Auto-Claude

Length of output: 317


Remove duplicate _is_process_running definition from models.py.

The _is_process_running function is defined in apps/backend/core/workspace/models.py (lines 15-36) but already exists in apps/backend/core/workspace/git_utils.py (lines 361-383) with identical logic. Import from git_utils instead to follow DRY principles.

🔎 Proposed fix

In apps/backend/core/workspace/models.py, replace the function definition with an import:

 import sys
 from dataclasses import dataclass
 from enum import Enum
 from pathlib import Path
+from .git_utils import is_process_running as _is_process_running
-
-def _is_process_running(pid: int) -> bool:
-    """Check if a process with the given PID is running (cross-platform)."""
-    import os
-
-    if sys.platform == "win32":
-        # On Windows, os.kill(pid, 0) doesn't work - it throws OSError
-        # Use ctypes to call OpenProcess instead
-        import ctypes
-
-        kernel32 = ctypes.windll.kernel32
-        PROCESS_QUERY_LIMITED_INFORMATION = 0x1000
-        handle = kernel32.OpenProcess(PROCESS_QUERY_LIMITED_INFORMATION, False, pid)
-        if handle:
-            kernel32.CloseHandle(handle)
-            return True
-        return False
-    else:
-        try:
-            os.kill(pid, 0)
-            return True
-        except (OSError, ProcessLookupError):
-            return False

Committable suggestion skipped: line range outside the PR's diff.

🤖 Prompt for AI Agents
In @apps/backend/core/workspace/git_utils.py around lines 361 - 383, Models.py
contains a duplicate _is_process_running implementation; delete that function
and import the shared implementation from git_utils instead. Replace the local
definition with a single import line like `from ..git_utils import
is_process_running as _is_process_running` (or import is_process_running and
update local call sites to use is_process_running) so all callers in models.py
reference the canonical function in git_utils (function name:
is_process_running) and remove the duplicate code.

- install_hook.py: Skip chmod on Windows (git hooks work without it)
- test_graphiti_memory.py: Use tempfile.mkdtemp() instead of /tmp
- test_context_gatherer.py: Use tempfile.gettempdir() instead of /tmp

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <[email protected]>
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Actionable comments posted: 1

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)
apps/backend/runners/github/test_context_gatherer.py (1)

180-180: Apply the same Windows compatibility fix here.

Line 60 was updated to use tempfile.gettempdir(), but this line still uses the hardcoded Unix path /tmp. This will cause test_get_file_extension to fail on Windows.

🔎 Proposed fix
-    gatherer = PRContextGatherer(Path("/tmp"), 1)
+    gatherer = PRContextGatherer(Path(tempfile.gettempdir()), 1)
🤖 Fix all issues with AI agents
In @apps/backend/integrations/graphiti/test_graphiti_memory.py:
- Around line 435-437: Replace the use of tempfile.mkdtemp() that creates
test_spec_dir and test_project_dir with context-managed TemporaryDirectory
instances or ensure explicit cleanup at the end of the test: either wrap
creation in tempfile.TemporaryDirectory() (assign Path(temporary_directory.name)
to test_spec_dir/test_project_dir) so directories are removed automatically, or
add a finally block that calls shutil.rmtree(test_spec_dir, ignore_errors=True)
and shutil.rmtree(test_project_dir, ignore_errors=True) to guarantee removal
even on test failure; reference the variables test_spec_dir and test_project_dir
when making the change.
📜 Review details

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 6c65046 and b12a233.

📒 Files selected for processing (3)
  • apps/backend/integrations/graphiti/test_graphiti_memory.py
  • apps/backend/merge/install_hook.py
  • apps/backend/runners/github/test_context_gatherer.py
🧰 Additional context used
📓 Path-based instructions (2)
apps/backend/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

apps/backend/**/*.py: Always use the Claude Agent SDK (claude-agent-sdk package) for all AI interactions, never use the Anthropic API directly
Use the create_client() function from apps/backend/core/client.py to instantiate Claude SDK clients, not direct ClaudeSDKClient initialization

Files:

  • apps/backend/integrations/graphiti/test_graphiti_memory.py
  • apps/backend/runners/github/test_context_gatherer.py
  • apps/backend/merge/install_hook.py

⚙️ CodeRabbit configuration file

apps/backend/**/*.py: Focus on Python best practices, type hints, and async patterns.
Check for proper error handling and security considerations.
Verify compatibility with Python 3.12+.

Files:

  • apps/backend/integrations/graphiti/test_graphiti_memory.py
  • apps/backend/runners/github/test_context_gatherer.py
  • apps/backend/merge/install_hook.py
apps/backend/integrations/graphiti/**/*.py

📄 CodeRabbit inference engine (CLAUDE.md)

Use the Graphiti-provided multi-provider support for LLMs (OpenAI, Anthropic, Azure OpenAI, Ollama, Google AI) via integrations/graphiti/graphiti_providers.py

Files:

  • apps/backend/integrations/graphiti/test_graphiti_memory.py
🧠 Learnings (2)
📚 Learning: 2025-12-30T16:38:36.314Z
Learnt from: CR
Repo: AndyMik90/Auto-Claude PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-30T16:38:36.314Z
Learning: Applies to apps/backend/agents/**/*.py : Use Graphiti memory system (`integrations/graphiti/`) for cross-session context and knowledge graph management in agents

Applied to files:

  • apps/backend/integrations/graphiti/test_graphiti_memory.py
📚 Learning: 2025-12-30T16:38:36.314Z
Learnt from: CR
Repo: AndyMik90/Auto-Claude PR: 0
File: CLAUDE.md:0-0
Timestamp: 2025-12-30T16:38:36.314Z
Learning: Applies to apps/backend/integrations/graphiti/**/*.py : Use the Graphiti-provided multi-provider support for LLMs (OpenAI, Anthropic, Azure OpenAI, Ollama, Google AI) via `integrations/graphiti/graphiti_providers.py`

Applied to files:

  • apps/backend/integrations/graphiti/test_graphiti_memory.py
🔇 Additional comments (3)
apps/backend/merge/install_hook.py (1)

116-123: LGTM! Clean Windows compatibility handling.

The platform-specific chmod logic is correct. On Windows, Git for Windows handles hook executability without requiring explicit permissions, so skipping chmod is appropriate. The sys.platform != "win32" check is the standard way to detect Windows in Python.

apps/backend/runners/github/test_context_gatherer.py (1)

8-8: LGTM! Good Windows compatibility improvement.

The tempfile import and usage of tempfile.gettempdir() correctly addresses Windows compatibility. This ensures the test uses the platform-appropriate temporary directory (C:\Users\<user>\AppData\Local\Temp on Windows, /tmp on Unix).

Also applies to: 60-60

apps/backend/integrations/graphiti/test_graphiti_memory.py (1)

39-39: LGTM! Good cross-platform temporary directory handling.

The use of tempfile.mkdtemp() with descriptive prefixes correctly creates platform-appropriate temporary directories for testing. This addresses Windows compatibility where hardcoded Unix paths like /tmp would fail.

Also applies to: 435-437

Comment on lines +435 to +437
# Create temporary directories for testing (cross-platform)
test_spec_dir = Path(tempfile.mkdtemp(prefix="graphiti_test_spec_"))
test_project_dir = Path(tempfile.mkdtemp(prefix="graphiti_test_project_"))
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🧹 Nitpick | 🔵 Trivial

Consider using context manager for automatic cleanup.

While tempfile.mkdtemp() works correctly, the created directories are never cleaned up after the test completes. This leads to accumulation of temporary directories over time.

🔎 Recommended refactor using TemporaryDirectory
-        # Create temporary directories for testing (cross-platform)
-        test_spec_dir = Path(tempfile.mkdtemp(prefix="graphiti_test_spec_"))
-        test_project_dir = Path(tempfile.mkdtemp(prefix="graphiti_test_project_"))
+        # Create temporary directories for testing (cross-platform)
+        with tempfile.TemporaryDirectory(prefix="graphiti_test_spec_") as spec_tmp, \
+             tempfile.TemporaryDirectory(prefix="graphiti_test_project_") as proj_tmp:
+            test_spec_dir = Path(spec_tmp)
+            test_project_dir = Path(proj_tmp)
+            
+            # ... rest of the function code indented one level ...

Alternatively, add explicit cleanup before the function returns:

import shutil

# At the end of the function, before return statements
try:
    shutil.rmtree(test_spec_dir, ignore_errors=True)
    shutil.rmtree(test_project_dir, ignore_errors=True)
except Exception:
    pass  # Best effort cleanup

Committable suggestion skipped: line range outside the PR's diff.

🤖 Prompt for AI Agents
In @apps/backend/integrations/graphiti/test_graphiti_memory.py around lines 435
- 437, Replace the use of tempfile.mkdtemp() that creates test_spec_dir and
test_project_dir with context-managed TemporaryDirectory instances or ensure
explicit cleanup at the end of the test: either wrap creation in
tempfile.TemporaryDirectory() (assign Path(temporary_directory.name) to
test_spec_dir/test_project_dir) so directories are removed automatically, or add
a finally block that calls shutil.rmtree(test_spec_dir, ignore_errors=True) and
shutil.rmtree(test_project_dir, ignore_errors=True) to guarantee removal even on
test failure; reference the variables test_spec_dir and test_project_dir when
making the change.

@AndyMik90 AndyMik90 self-assigned this Jan 7, 2026
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🤖 Auto Claude PR Review

Merge Verdict: 🔴 BLOCKED

Blocked: 5 workflow(s) awaiting approval. Approve workflows on GitHub to run CI checks.

Risk Assessment

Factor Level Notes
Complexity Low Based on lines changed
Security Impact None Based on security findings
Scope Coherence Good Based on structural review

🚨 Blocking Issues (Must Fix)

  • Workflows Pending: 5 workflow(s) awaiting maintainer approval
  • Redundancy: Duplicated is_process_running function across modules (apps/backend/core/workspace/models.py:15)

Findings Summary

  • High: 1 issue(s)
  • Low: 4 issue(s)

Generated by Auto Claude PR Review

Findings (5 selected of 5 total)

🟠 [1e1112d8386f] [HIGH] Duplicated is_process_running function across modules

📁 apps/backend/core/workspace/models.py:15

The _is_process_running() function in models.py (lines 15-36) is a complete duplicate of is_process_running() in git_utils.py (lines 361-383). Both implementations are identical, handling Windows ctypes/OpenProcess and Unix os.kill(pid, 0). The codebase already exports is_process_running from git_utils.py through workspace/init.py. This creates unnecessary maintenance burden - bug fixes or improvements must be applied to both copies.

Suggested fix:

Remove the duplicate function from models.py and import from git_utils instead:

# At top of models.py
from .git_utils import is_process_running as _is_process_running

🔵 [4fca6a008df7] [LOW] Duplicated cleanup logic in Windows worktree fallback

📁 apps/backend/core/worktree.py:452

The Windows worktree creation fallback contains three instances of identical cleanup code: shutil.rmtree(worktree_path, ignore_errors=True) followed by self._run_git(['worktree', 'prune']). This appears at lines 452-454, 474-475, and 496-497. While acceptable in error handling paths where explicitness is valued, extracting to a helper method would improve maintainability.

Suggested fix:

Extract cleanup logic to a private method:

def _cleanup_failed_worktree(self, worktree_path: Path) -> None:
    if worktree_path.exists():
        shutil.rmtree(worktree_path, ignore_errors=True)
    self._run_git(["worktree", "prune"])

🔵 [678ec80eb17b] [LOW] Import sys should be at module level for consistency

📁 apps/backend/core/worktree.py:444

The sys module is imported inside the error handler (line 444) rather than at the module level. Since sys is a standard library module with no side effects, and the module already imports other standard modules (os, re, shutil, subprocess) at the top, moving this import would improve consistency.

Suggested fix:

Move 'import sys' to the top-level imports (after line 21) and remove the local import at line 444.

🔵 [e8e89cee6d4e] [LOW] High complexity in Windows worktree fallback logic

📁 apps/backend/core/worktree.py:441

The Windows worktree creation fallback has deeply nested error handling with multiple fallback strategies (4-5 levels of nesting): primary git worktree add → Windows --no-checkout fallback → git read-tree → git checkout-index. While necessary for Windows compatibility, this complexity makes the code harder to follow and maintain.

Suggested fix:

Extract Windows worktree creation to a separate method: _create_worktree_windows(). This separates concerns and reduces nesting in the main create_worktree() method.

🔵 [d0458a541346] [LOW] Temporary directories not cleaned up after test

📁 apps/backend/integrations/graphiti/test_graphiti_memory.py:436

The test creates temporary directories using tempfile.mkdtemp() but doesn't clean them up after the test completes. While this works correctly and is common in test code, using tempfile.TemporaryDirectory() context manager would ensure automatic cleanup.

Suggested fix:

Optional: Use tempfile.TemporaryDirectory() context manager for automatic cleanup, or add explicit cleanup in test teardown.

This review was generated by Auto Claude.

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