Update handling of Zlib by configure

[drroe]

Updates the downloaded zlib version to something more current. Make sure if zlib is built/specified it is passed to HDF5 (if also being built). Remove dependence on bc.

[drroe]

I really do dislike python...

==================================== ERRORS ====================================
__________________ ERROR collecting tests/run_simple_test.py ___________________
ImportError while importing test module '/home/runner/work/cpptraj/cpptraj/pytraj/tests/run_simple_test.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/share/miniconda/lib/python3.10/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
run_simple_test.py:6: in <module>
    from pytraj import *
/usr/share/miniconda/lib/python3.10/site-packages/pytraj-2.0.6.dev0-py3.10-linux-x86_64.egg/pytraj/__init__.py:24: in <module>
    from .utils.misc import info
/usr/share/miniconda/lib/python3.10/site-packages/pytraj-2.0.6.dev0-py3.10-linux-x86_64.egg/pytraj/utils/misc.py:7: in <module>
    from pytraj.core.c_options import set_world_silent
/usr/share/miniconda/lib/python3.10/site-packages/pytraj-2.0.6.dev0-py3.10-linux-x86_64.egg/pytraj/core/__init__.py:2: in <module>
    from .topology_objects import Atom, Residue, Molecule
E   ImportError: /usr/share/miniconda/lib/python3.10/site-packages/numpy/_core/../../../../libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/runner/work/cpptraj/cpptraj/lib/libcpptraj.so)

Going to see if pinning pytraj testing to python 3.12 magically fixes conda.

[drroe]

Well at least it's running now. Have an actual test failure: https://github.com/Amber-MD/cpptraj/actions/runs/13337802400/job/37256651726?pr=1130

@hainm , in your opinion could this be a numpy version thing?

[hainm]

@hainm , in your opinion could this be a numpy version thing?

I am not so sure. May be try to keep the 2.0.0 for now?