DigitalTWINS Portal

Deploy locally

Docker setup

• Clone the repo to your PC

# 1. start docker
cd DigitalTWINS-Portal

docker compose up --build -d

How to Use the Study Dashboard

Table of Contents

• Step 1: Access the Study Dashboard in the DigitalTWINS Portal
• Step 2: Edit an Assay
• Step 3: Launch an Assay
• Step 4: Monitor an Assay
• Step 5: Verify an Assay
• Step 6: Download a Dataset
• Step 7: Submit a Dataset

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Step 1: Access the Study Dashboard in the DigitalTWINS Portal

Study Dashboard

Here you can find information about all Programmes, Projects, Investigations, Studies, and Assays.

You can click the EXPLORE button under the Programmes, Projects, Investigations, or Studies catalogues to view more details.

Once you enter the Assays page, you can:

• Edit an assay
• Launch an assay
• Monitor an assay
• Verify an assay
• Download a dataset
• Submit a dataset

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Step 2: Edit an Assay

• Click the EDIT button on the assay page.
• On the Edit page, you can configure the assay by selecting a workflow:
  • A CWL script–based workflow, or
  • A Web GUI–based workflow
• After choosing a workflow, select the dataset and sample type for its inputs and outputs.
• Finally, specify how many cohorts you want to execute for this assay.

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Step 3: Launch an Assay

After editing the assay, click the LAUNCH button.

• CWL script–based workflow
  The workflow will run in Airflow.
• Web GUI–based workflow
  A Web GUI will be displayed in the DigitalTWINS Portal.

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Step 4: Monitor an Assay

If your assay uses a CWL script–based workflow, the MONITOR button becomes available once the workflow starts running in Airflow.
Click it to track the execution progress of the assay.

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Step 5: Verify an Assay

For CWL script–based workflows, once execution is complete in Airflow, click the VERIFY button to review the resulting dataset.

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Step 6: Download a Dataset

For CWL script–based workflows, after the execution finishes in Airflow, you can download the resulting dataset to your local machine.

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Step 7: Submit a Dataset

For CWL script–based workflows, once you are satisfied with the result dataset, you can upload it to the DigitalTWINS platform by clicking the SUBMIT button.