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Bump bio from 1.5.0 to 2.0.0 #248

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@dependabot dependabot bot commented on behalf of github Jul 7, 2024

Bumps bio from 1.5.0 to 2.0.0.

Changelog

Sourced from bio's changelog.

2.0.0 (2024-07-03)

⚠ BREAKING CHANGES

  • Refactor misleadingly named method io::gff::Record::frame to phase and improve typing (#593)

refactor

  • Refactor misleadingly named method io::gff::Record::frame to phase and improve typing (#593) (216d925)

Bug Fixes

Dependencies

  • update itertools requirement from >=0.8, <0.12 to >=0.8, <0.13 (#562) (a79e5c9)
  • update itertools requirement from >=0.8, <0.13 to >=0.8, <0.14 (#590) (973ac0c)
  • update multimap requirement from >=0.6, <0.10 to >=0.6, <0.11 (#587) (fe8f10c)
  • update ordered-float requirement from 3.1 to 4.2 (#565) (3b87ecd)
  • update strum_macros requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27 (#586) (9912528)

1.6.0 (2024-02-07)

Features

  • POA semi-global, local, and custom alignment (#569) (440cb1c)
Commits
  • fb0cba7 chore(master): release 2.0.0 (#585)
  • 973ac0c deps: update itertools requirement from >=0.8, <0.13 to >=0.8, <0.14 (#590)
  • fe8f10c deps: update multimap requirement from >=0.6, <0.10 to >=0.6, <0.11 (#587)
  • ef169d2 Added public function for suffix array construction from integer alphabet (#550)
  • 9912528 deps: update strum_macros requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27...
  • 3b87ecd deps: update ordered-float requirement from 3.1 to 4.2 (#565)
  • 8301c51 🔥 Remove unnecessary use of unsafe (#582)
  • 68791f3 fix: Fix clippy warnings (#584)
  • 216d925 refactor!: Refactor misleadingly named method io::gff::Record::frame to phase...
  • a79e5c9 deps: update itertools requirement from >=0.8, <0.12 to >=0.8, <0.13 (#562)
  • Additional commits viewable in compare view

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Bumps [bio](https://github.com/rust-bio/rust-bio) from 1.5.0 to 2.0.0.
- [Release notes](https://github.com/rust-bio/rust-bio/releases)
- [Changelog](https://github.com/rust-bio/rust-bio/blob/master/CHANGELOG.md)
- [Commits](rust-bio/rust-bio@v1.5.0...v2.0.0)

---
updated-dependencies:
- dependency-name: bio
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Jul 7, 2024
@dependabot dependabot bot mentioned this pull request Jul 7, 2024
@govinda-kamath
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govinda-kamath commented Jul 7, 2024

@sjackman @adam-azarchs -- Okay to merge this? (unsure because test coverage here does not seem to be a lot)

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The "breaking" change there was just renaming something. If it caused a problem it would be at build time. Other than that the changes look trivial.

@adam-azarchs
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(and in any case this is just widening the version range; downstream users are responsible for any breakage in their use cases resulting from them updating their Cargo.lock)

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@dependabot squash and merge

@dependabot dependabot bot merged commit 343406c into master Jul 8, 2024
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@dependabot dependabot bot deleted the dependabot/cargo/bio-2.0.0 branch July 8, 2024 13:27
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