error: this `if` statement can be collapsed --> src/read_pair_iter.rs:440:21 | 440 | / if idx == 0 && self.r1_interleaved && !iter_ended[idx] { 441 | | if !is_single_ended { 442 | | iter.advance() 443 | | .fastq_err(paths[idx].as_ref().unwrap(), (rec_num[idx] + 1) * 4)?; ... | 477 | | } 478 | | } | |_____________________^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#collapsible_if note: the lint level is defined here --> src/lib.rs:12:9 | 12 | #![deny(warnings, unused)] | ^^^^^^^^ = note: `#[deny(clippy::collapsible_if)]` implied by `#[deny(warnings)]` help: collapse nested if block | 440 ~ if idx == 0 && self.r1_interleaved && !iter_ended[idx] && !is_single_ended { 441 + iter.advance() 442 + .fastq_err(paths[idx].as_ref().unwrap(), (rec_num[idx] + 1) * 4)?; 443 + let record = iter.get(); 444 + 445 + // Check for non-ACGTN characters 446 + if let Some(ref rec) = record { 447 + if !fastq::Record::validate_dnan(rec) { 448 + let msg = "FASTQ contains sequence base with character other than [ACGTN].".to_string(); 449 + let e = FastqError::format( 450 + msg, 451 + paths[idx].as_ref().unwrap(), 452 + rec_num[idx] * 4, 453 + ); 454 + return Err(e); 455 + } 456 + 457 + if sample { 458 + let which = WhichRead::read_types()[idx + 1]; 459 + let read_length = read_lengths[which as usize]; 460 + let tr = TrimRecord::new(rec, read_length); 461 + rp.push_read(&tr, which) 462 + } 463 + } else { 464 + // We should only hit this if the FASTQ has an odd 465 + // number of records. Throw an error 466 + let msg = "Input FASTQ file was input as interleaved R1 and R2, but contains an odd number of records".to_string(); 467 + let e = FastqError::format( 468 + msg, 469 + paths[idx].as_ref().unwrap(), 470 + rec_num[idx] * 4, 471 + ); 472 + return Err(e); 473 + } 474 + 475 + rec_num[idx] += 1; 476 + } |

Clippy had exited with the 101 exit code