Escort/NAMESPACE at main · xiaorudong/Escort · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(BWClusters)
export(BWClusters_Determination)
export(DE_edgeR)
export(GOFeval)
export(HD_DCClusterscheck)
export(HVGs_GO)
export(HVGs_quick)
export(JaccardIndex_fun)
export(LD_DCClusterscheck)
export(NbClust)
export(Similaritycheck)
export(UshapeDetector)
export(boxB)
export(calcScore)
export(getDR_2D)
export(myscLCA)
export(prepTraj)
export(quick_model_gene_var)
export(segFormat)
export(shinyEscort)
export(step1_testHomogeneous)
import(DT)
import(alphahull)
import(clusterProfiler)
import(magrittr)
import(mclust)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
import(parallelDist)
import(robustbase)
import(shinydashboard)
import(stats)
import(tibble)
importFrom(FNN,get.knn)
importFrom(Rtsne,Rtsne)
importFrom(SC3,sc3)
importFrom(SCORPIUS,reduce_dimensionality)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(ash,ash1)
importFrom(ash,bin1)
importFrom(clusterProfiler,rename)
importFrom(dplyr,across)
importFrom(dplyr,first)
importFrom(dplyr,intersect)
importFrom(dplyr,mutate)
importFrom(dplyr,setdiff)
importFrom(dplyr,setequal)
importFrom(dplyr,src)
importFrom(dplyr,summarize)
importFrom(dplyr,union)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,topTags)
importFrom(fastICA,fastICA)
importFrom(jmuOutlier,perm.cor.test)
importFrom(limma,makeContrasts)
importFrom(limma,weighted.median)
importFrom(limma,weightedLowess)
importFrom(magrittr,"%>%")
importFrom(parallelDist,parDist)
importFrom(pracma,trapz)
importFrom(rstatix,mahalanobis_distance)
importFrom(scales,alpha)
importFrom(sfsmisc,integrate.xy)
importFrom(shinycssloaders,withSpinner)
importFrom(shinydashboard,box)
importFrom(shinyjs,alert)
importFrom(shinyjs,html)
importFrom(shinyjs,show)
importFrom(shotGroups,getMinCircle)
importFrom(stats,aggregate)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,end)
importFrom(stats,filter)
importFrom(stats,lag)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(stats,start)
importFrom(stats,var)
importFrom(stats,window)
importFrom(stats,xtabs)
importFrom(umap,umap)