docker-compose.yml

---

# You typically create .env file to populate the
# sensitive variables for the backend deployment.
# Then bring the containers up with: -
#   docker-compose up -d
# Then enter the backend container with: -
#   docker-compose exec backend bash
# Where you should then find the back end at http://localhost:8080/api/
# and logs in /code/logs/backend.log and on your local machine in ../data/logs/backend.log

version: '3'

services:

  # The database
  database:
    image: postgres:12.16-alpine3.18
    container_name: database
    volumes:
    - ./data/postgresql/data:/var/lib/postgresql/data
    environment:
      POSTGRES_PASSWORD: fragalysis
      POSTGRES_DB: frag
      PGDATA: /var/lib/postgresql/data/pgdata
    ports:
    - "5432:5432"
    healthcheck:
      test: pg_isready -U postgres -d frag
      interval: 10s
      timeout: 2s
      retries: 5
      start_period: 10s

  # Redis (Celery/Worker Broker)
  redis:
    image: redis:7.2.3-alpine3.18
    container_name: redis
    volumes:
    - ./data/redis/data:/data
    ports:
    - "6379:6379"
    healthcheck:
      test: redis-cli ping
      interval: 10s
      timeout: 2s
      retries: 5
      start_period: 10s

  # The graph
  graph:
    image: neo4j:4.4.2
    container_name: graph
    ports:
    # These are not used in production
    - "7474:7474"
    - "7687:7687"
    ulimits:
      nofile:
        soft: 40000
        hard: 40000
    volumes:
    - ./data/neo4j/data:/data
    - ./data/neo4j/logs:/logs
    environment:
    - NEO4J_AUTH=none
    - NEO4J_dbms_memory_pagecache_size=4G
    healthcheck:
      test: wget http://localhost:7474 || exit 1
      interval: 10s
      timeout: 10s
      retries: 20
      start_period: 10s

  # The stack backend
  backend:
    image: ${BE_NAMESPACE:-xchem}/fragalysis-backend:${BE_IMAGE_TAG:-latest}
    container_name: backend
    build:
      context: .
      dockerfile: Dockerfile
    command: /bin/bash /code/launch-stack.sh
    volumes:
    - ./data/logs:/code/logs/
    - ./data/media:/code/media/
    - .:/code/
    env_file:
      - .env
    environment:
      AUTHENTICATE_UPLOAD: ${AUTHENTICATE_UPLOAD:-True}
      DEPLOYMENT_MODE: 'development'
      POSTGRESQL_USER: postgres
      # Comma-separated dforced errors (infections?)
      INFECTIONS: ''
      # Celery tasks need to run synchronously
      CELERY_TASK_ALWAYS_EAGER: 'True'
      # Error reporting and default/root log-level
      FRAGALYSIS_BACKEND_SENTRY_DNS: ${FRAGALYSIS_BACKEND_SENTRY_DNS}
      LOGGING_FRAMEWORK_ROOT_LEVEL: ${LOGGING_FRAMEWORK_ROOT_LEVEL:-INFO}
      # Keycloak configuration
      OIDC_KEYCLOAK_REALM: ${OIDC_KEYCLOAK_REALM}
      OIDC_RP_CLIENT_ID: ${OIDC_RP_CLIENT_ID:-fragalysis-local}
      OIDC_RP_CLIENT_SECRET: ${OIDC_RP_CLIENT_SECRET}
      OIDC_AS_CLIENT_ID: ${OIDC_AS_CLIENT_ID:-account-server-api}
      OIDC_DM_CLIENT_ID: ${OIDC_DM_CLIENT_ID:-data-manager-api}
      OIDC_RENEW_ID_TOKEN_EXPIRY_MINUTES: '210'
      # Public target access strings?
      # A comma-separated list of Project titles.
      PUBLIC_TAS: ${PUBLIC_TAS:-lb18145-1}
      # Squonk configuration
      SQUONK2_VERIFY_CERTIFICATES: 'No'
      SQUONK2_UNIT_BILLING_DAY: 3
      SQUONK2_PRODUCT_FLAVOUR: BRONZE
      SQUONK2_SLUG: fs-local
      SQUONK2_ORG_OWNER: ${SQUONK2_ORG_OWNER}
      SQUONK2_ORG_OWNER_PASSWORD: ${SQUONK2_ORG_OWNER_PASSWORD}
      SQUONK2_ORG_UUID: ${SQUONK2_ORG_UUID}
      SQUONK2_UI_URL: ${SQUONK2_UI_URL}
      SQUONK2_DMAPI_URL: ${SQUONK2_DMAPI_URL}
      SQUONK2_ASAPI_URL: ${SQUONK2_ASAPI_URL}
      PROXY_FORWARDED_PROTO_HEADER: ${PROXY_FORWARDED_PROTO_HEADER:-http}
    ports:
    - "8080:80"
    depends_on:
      database:
        condition: service_healthy
      redis:
        condition: service_healthy
      graph:
        condition: service_healthy