From 95b80f0768e7e0cbe780d876c8728cd982815c9a Mon Sep 17 00:00:00 2001 From: wasserth Date: Wed, 10 Jul 2024 14:19:45 +0200 Subject: [PATCH] add link to task finder to readme --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index d29b11733..eed6dca34 100644 --- a/README.md +++ b/README.md @@ -4,12 +4,14 @@ Tool for segmentation of most major anatomical structures in any CT or MR image. **ANNOUNCEMENT: We recently added support for MR images. Try out by using the task `-ta total_mr` or see more details in our [paper](https://arxiv.org/abs/2405.19492).** -Supported classes for CT: +Main classes for CT: ![Alt text](resources/imgs/overview_classes_v2.png) -Supported classes for MR: +Main classes for MR: ![Alt text](resources/imgs/overview_classes_mr.png) +See [here](https://backend.totalsegmentator.com/find-task/) for all available structures. + Created by the department of [Research and Analysis at University Hospital Basel](https://www.unispital-basel.ch/en/radiologie-nuklearmedizin/forschung-radiologie-nuklearmedizin). If you use it please cite our [Radiology AI paper](https://pubs.rsna.org/doi/10.1148/ryai.230024) ([free preprint](https://arxiv.org/abs/2208.05868)). If you use it for MR images please cite the [TotalSegmentator MRI paper](https://arxiv.org/abs/2405.19492). Please also cite [nnUNet](https://github.com/MIC-DKFZ/nnUNet) since TotalSegmentator is heavily based on it. @@ -84,6 +86,8 @@ Usage: TotalSegmentator -i ct.nii.gz -o segmentations -ta ``` +Confused by all the structures and tasks? Check [this](https://backend.totalsegmentator.com/find-task/) to search through available structures and tasks. + The mapping from label ID to class name can be found [here](https://github.com/wasserth/TotalSegmentator/blob/master/totalsegmentator/map_to_binary.py).