Would be helpful to include the index file (csi) directly in the <test_data> folder (test.vcf.gz.csi).
Currently, running the pixi run test out of the box leads to it exiting after trying to generate haplotype 1...without any error messaging or error files generated (since 2>/dev/null in generate_haplotypes.sh).
Would be helpful to include the index file (csi) directly in the <test_data> folder (test.vcf.gz.csi).
Currently, running the
pixi run testout of the box leads to it exiting after trying to generate haplotype 1...without any error messaging or error files generated (since 2>/dev/null in generate_haplotypes.sh).