example_configs.py

dries = {
    "name": "Dries",
    "version": "1.0.0",
    "description": "Giotto, a pipeline for integrative analysis and visualization of single-cell spatial transcriptomic data",
    "public": True,
    "datasets": [
        {
            "uid": 'dries-2019',
            "name": 'Dries 2019',
            "files": [
                {
                    "type": "cells",
                    "fileType": "cells.json",
                    "url": "https://s3.amazonaws.com/vitessce-data/0.0.31/master_release/dries/dries.cells.json"
                },
                {
                    "type": "cell-sets",
                    "fileType": "cell-sets.json",
                    "url": "https://s3.amazonaws.com/vitessce-data/0.0.31/master_release/dries/dries.cell-sets.json"
                }
            ]
        }
    ],
    "initStrategy": "auto",
    "coordinationSpace": {
        "embeddingType": {
            "TSNE": 't-SNE',
            "UMAP": 'UMAP',
        },
        "embeddingZoom": {
            "TSNE": 3,
            "UMAP": 3,
        },
        "spatialZoom": {
            "A": -4.4,
        },
        "spatialTargetX": {
            "A": 3800,
        },
        "spatialTargetY": {
            "A": -900,
        },
    },
    "layout": [
        {
            "component": "description",
            "props": {
                "description": "Giotto, a pipeline for integrative analysis and visualization of single-cell spatial transcriptomic data"
            },
            "x": 9,
            "y": 0,
            "w": 3,
            "h": 4
        },
        {
            "component": "cellSets",
            "x": 9,
            "y": 4,
            "w": 3,
            "h": 4
        },
        {
            "component": "cellSetSizes",
            "x": 5,
            "y": 4,
            "w": 4,
            "h": 4
        },
        {
            "component": "scatterplot",
            "coordinationScopes": {
                "embeddingType": 'TSNE',
                "embeddingZoom": 'TSNE'
            },
            "x": 0,
            "y": 2,
            "w": 5,
            "h": 4
        },
        {
            "component": "spatial",
            "props": {
                "cellRadius": 50
            },
            "coordinationScopes": {
                "spatialZoom": 'A',
                "spatialTargetX": 'A',
                "spatialTargetY": 'A'
            },
            "x": 5,
            "y": 0,
            "w": 4,
            "h": 4
        },
        {
            "component": "scatterplot",
            "coordinationScopes": {
                "embeddingType": 'UMAP',
                "embeddingZoom": 'UMAP'
            },
            "x": 0,
            "y": 0,
            "w": 5,
            "h": 4
        }
    ]
}