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Returning results for workflows executed on remote host #1437

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BoPeng opened this issue Feb 26, 2021 · 0 comments
Open

Returning results for workflows executed on remote host #1437

BoPeng opened this issue Feb 26, 2021 · 0 comments
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BoPeng commented Feb 26, 2021

When submitting workflows and tasks to a cluster (eg

%run check_validation -q yale_hpc_task_spooler -r yale_hpc_task_spooler

is there a way to synchronize the output back to my local computer?

Using a named path like #scratch fails with

WARNING: Error from step check_validation is ignored: [check_validation]:
 Failed to process step output (f'#scratch/helen_mixed_infection/data/fqtools/good_files.txt'): 'NoneType' object has no attribute 'expanduser'
@BoPeng BoPeng self-assigned this Feb 26, 2021
@BoPeng BoPeng added the bug label Feb 26, 2021
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