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<!DOCTYPE html>
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<title>Galaxy Europe</title>
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<h1 id="scientific-research-using--citing-the-european-galaxy-server">Scientific research using & citing the European Galaxy server</h1>
<p><br />
This is the list of scientific publications that cited the European Galaxy instance sorted by year.
Please help us to support this project with your <a href="/about">acknowledgement</a>.
<br /><br /></p>
<h2 class="bibliography">2025</h2>
<ol class="bibliography"><li><span id="baei_pharmacophore_2025">Baei,B. <i>et al.</i> (2025) Pharmacophore modeling and QSAR analysis of anti-HBV flavonols. <i>PLOS ONE</i>, <b>20</b>, e0316765.</span></li>
<li><span id="cruz-ojeda_silico_2025">Cruz-Ojeda,P.de la <i>et al.</i> (2025) In silico analysis of lncRNA-miRNA-mRNA signatures related to Sorafenib effectiveness in liver cancer cells. <i>World Journal of Gastroenterology</i>, <b>31</b>.</span></li>
<li><span id="goclowski_galaxy_2025">Goclowski,C.L. <i>et al.</i> (2025) Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq. <i>GigaScience</i>, <b>14</b>, giae107.</span></li>
<li><span id="lee_little_2025">Lee,F.C.H. <i>et al.</i> (2025) Little influence of DNA quality on the direct sequencing output of non-human primates’ faecal samples. <i>Journal of Virological Methods</i>, <b>332</b>, 115074.</span></li>
<li><span id="perez_investigating_2025">Perez,J.M. <i>et al.</i> (2025) Investigating proteogenomic divergence in patient-derived xenograft models of ovarian cancer. <i>Scientific Reports</i>, <b>15</b>, 813.</span></li></ol>
<h2 class="bibliography">2024</h2>
<ol class="bibliography"><li><span id="abusaleh_genetic_2024">AbuSaleh,L. <i>et al.</i> (2024) Genetic Polymorphisms of Angiotensin-Converting Enzyme 1 (ACE1) and ACE2 Associated With Severe Acute Respiratory Syndrome COVID-19 in the Palestinian Population. <i>Cureus</i>, <b>16</b>.</span></li>
<li><span id="aerts_altered_2024">Aerts,T. <i>et al.</i> (2024) Altered socio-affective communication and amygdala development in mice with protocadherin10-deficient interneurons. <i>Open Biology</i>, <b>14</b>, 240113.</span></li>
<li><span id="aguirre_pranzoni_biofoams_2024">Aguirre Pranzoni,C. <i>et al.</i> (2024) Biofoams with untapped enzymatic potential produced from beer bagasse by indigenous fungal strains. <i>Bioresource Technology</i>, <b>406</b>, 131037.</span></li>
<li><span id="aguirre_pranzoni_biofoams_2025">Aguirre Pranzoni,C. <i>et al.</i> (2024) Biofoams with Untapped Enzymatic Potential Produced from Beer Bagasse by Indigenous Fungal Strains.</span></li>
<li><span id="akpinar_characterization_2024">Akpinar,Z. and Karaoglu,H. (2024) Characterization of a highly thermostable recombinant xylanase from <i>Anoxybacillu</i>s <i>ayderensis</i>. <i>Protein Expression and Purification</i>, <b>219</b>, 106478.</span></li>
<li><span id="alawi_private_2024">Alawi,M. <i>et al.</i> (2024) Private and well drinking water are reservoirs for antimicrobial resistant bacteria. <i>npj Antimicrobials and Resistance</i>, <b>2</b>, 1–16.</span></li>
<li><span id="albrecht_amplicon-based_2024">Albrecht,C. <i>et al.</i> (2024) Amplicon-Based Bisulfite Conversion-NGS DNA Methylation Analysis Protocol. In, Jeltsch,A. and Rots,M.G. (eds), <i>Epigenome Editing: Methods and Protocols</i>. Springer US, New York, NY, pp. 405–418.</span></li>
<li><span id="ali_bioinformatics_2024">Ali,M.A. <i>et al.</i> (2024) Bioinformatics and Computational Biology. In, Ijaz,S. <i>et al.</i> (eds), <i>Trends in Plant Biotechnology</i>. Springer Nature, Singapore, pp. 281–334.</span></li>
<li><span id="aljindan_phenomics_2024">AlJindan,R. <i>et al.</i> (2024) Phenomics and genomic features of <i>Enterococcus avium</i> IRMC1622a isolated from a clinical sample of hospitalized patient. <i>Journal of Infection and Public Health</i>.</span></li>
<li><span id="andriyanov_genomic_2024">Andriyanov,P.A. <i>et al.</i> (2024) Genomic analysis of multidrug-resistant Delftia tsuruhatensis isolated from raw bovine milk. <i>Frontiers in Microbiology</i>, <b>14</b>.</span></li>
<li><span id="arai_two_2024">Arai,H. <i>et al.</i> (2024) Two male-killing Wolbachia from Drosophila birauraia that are closely related but distinct in genome structure. <i>Royal Society Open Science</i>, <b>11</b>, 231502.</span></li>
<li><span id="argenta_american_2024">Argenta,N. <i>et al.</i> (2024) American lobster (Homarus americanus) hepatopancreas transcriptome reveals the significance of chitin-related genes during impoundment shell disease. <i>FACETS</i>, <b>9</b>, 1–10.</span></li>
<li><span id="aribisala_silico_2024">Aribisala,J.O. <i>et al.</i> (2024) In silico exploration of phenolics as modulators of penicillin binding protein (PBP) 2× of Streptococcus pneumoniae. <i>Scientific Reports</i>, <b>14</b>, 8788.</span></li>
<li><span id="arlat_generation_2024">Arlat,A. <i>et al.</i> (2024) Generation of functionally active resident macrophages from adipose tissue by 3D cultures. <i>Frontiers in Immunology</i>, <b>15</b>.</span></li>
<li><span id="arnold_unlocking_2024">Arnold,N.D. (2024) Unlocking a Potent Chitin Saccharification System in a Novel Bacterium Through Omics and Bioinformatics.</span></li>
<li><span id="arshad_comparative_2024">Arshad,A. <i>et al.</i> (2024) Comparative study of chloroplast genomes across seven Salacca species. <i>Biodiversitas Journal of Biological Diversity</i>, <b>25</b>.</span></li>
<li><span id="asiri_-silico_2024">Asiri,A. (2024) In-Silico Perspectives on the Potential Therapeutic Aids of Hesperetin Derivatives for Lung Cancer. <i>Advancements in Life Sciences</i>, <b>11</b>, 878–886.</span></li>
<li><span id="atac_identification_2024">Atac,D. <i>et al.</i> (2024) Identification and Characterization of ATOH7-Regulated Target Genes and Pathways in Human Neuroretinal Development. <i>Cells</i>, <b>13</b>, 1142.</span></li>
<li><span id="bahrami_integrated_2024">Bahrami,B. <i>et al.</i> (2024) Integrated analysis of transcriptome and epigenome reveals ENSR00000272060 as a potential biomarker in gastric cancer. <i>Epigenomics</i>, <b>16</b>, 159–173.</span></li>
<li><span id="balcke_coordinated_2024">Balcke,G.U. <i>et al.</i> (2024) Coordinated metabolic adaptation of Arabidopsis thaliana to high light. <i>The Plant Journal</i>, <b>120</b>, 387–405.</span></li>
<li><span id="barreira_predictability_2024">Barreira,E.M.da C. (2024) Predictability of genomic evolution of populations with contrasting initial history.</span></li>
<li><span id="bastide_genome_2024">Bastide,H. <i>et al.</i> (2024) The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins. <i>Current Biology</i>.</span></li>
<li><span id="bawin_cuscuta_2024">Bawin,T. <i>et al.</i> (2024) Cuscuta campestris fine-tunes gene expression during haustoriogenesis as an adaptation to different hosts. <i>Plant Physiology</i>, <b>194</b>, 258–273.</span></li>
<li><span id="becker_correlation_2024">Becker,A.-L. <i>et al.</i> (2024) Correlation of Immunomodulatory Cytokines with Tumor Volume and Cerebrospinal Fluid in Vestibular Schwannoma Patients. <i>Cancers</i>, <b>16</b>, 3002.</span></li>
<li><span id="beerling_enhanced_2024">Beerling,D.J. <i>et al.</i> (2024) Enhanced weathering in the US Corn Belt delivers carbon removal with agronomic benefits. <i>Proceedings of the National Academy of Sciences</i>, <b>121</b>, e2319436121.</span></li>
<li><span id="berlanga_biodiversity_2024">Berlanga,M. <i>et al.</i> (2024) Biodiversity and poten al func onality of biofilmsediment biotope in La Muerte lagoon, Monegros desert, Spain. <i>Frontiers in Ecology and Evolution</i>, <b>12</b>.</span></li>
<li><span id="besson_pan-flavivirus_2024">Besson,B. <i>et al.</i> (2024) Pan-flavivirus analysis reveals sfRNA-independent, 3′ UTR-biased siRNA production from an insect-specific flavivirus. <i>Journal of Virology</i>, <b>0</b>, e01215–24.</span></li>
<li><span id="bianconi_characterization_2024">Bianconi,I. <i>et al.</i> (2024) Characterization of Verona Integron-Encoded Metallo-β-Lactamase-Type Carbapenemase-Producing Escherichia coli Isolates Collected over a 16-Year Period in Bolzano (Northern Italy). <i>Microbial Drug Resistance</i>, <b>30</b>, 91–100.</span></li>
<li><span id="bianconi_disseminated_2024">Bianconi,I. <i>et al.</i> (2024) Disseminated Echovirus 11 infection in a newborn in the Province of Bolzano, Italy. <i>Infection</i>.</span></li>
<li><span id="bihani_metaproteomics_2024">Bihani,S. <i>et al.</i> (2024) Metaproteomics for Coinfections in the Upper Respiratory Tract: The Case of COVID-19. In, Salerno,C. (ed), <i>Metaproteomics: Methods and Protocols</i>. Springer US, New York, NY, pp. 165–185.</span></li>
<li><span id="bloor_rna_2024">Bloor,S. <i>et al.</i> (2024) RNA binding by Periphilin plays an essential role in initiating silencing by the HUSH complex. <i>Nucleic Acids Research</i>, gkae1165.</span></li>
<li><span id="bode_catecholamine_2024">Bode,C. <i>et al.</i> (2024) Catecholamine treatment induces reversible heart injury and cardiomyocyte gene expression. <i>Intensive Care Medicine Experimental</i>, <b>12</b>, 48.</span></li>
<li><span id="bode_dynamics_2024">Bode,C. <i>et al.</i> (2024) Dynamics of cardiomyocyte gene expression and reversibility of catecholamine-induced heart injury.</span></li>
<li><span id="boeckman_phage_2024">Boeckman,J. <i>et al.</i> (2024) Phage DNA Extraction, Genome Assembly, and Genome Closure. In, Tumban,E. (ed), <i>Bacteriophages: Methods and Protocols</i>, Methods in Molecular Biology. Springer US, New York, NY, pp. 125–144.</span></li>
<li><span id="bogguri_biphasic_2024">Bogguri,C. <i>et al.</i> (2024) Biphasic response of human iPSC-derived neural network activity following exposure to a sarin-surrogate nerve agent. <i>Frontiers in Cellular Neuroscience</i>, <b>18</b>.</span></li>
<li><span id="boneva_multifaceted_2024">Boneva,S.K. <i>et al.</i> (2024) The multifaceted role of vitreous hyalocytes: Orchestrating inflammation, angiomodulation and erythrophagocytosis in proliferative diabetic retinopathy. <i>Journal of Neuroinflammation</i>, <b>21</b>, 297.</span></li>
<li><span id="boyer_pulsar_2024">Boyer,T. and Neronov,A. (2024) Pulsar timing array constraints on the cosmological magnetic field from quark confinement epoch.</span></li>
<li><span id="brink_identification_2024">Brink,A.van den (2024) Identification of the Expression Patterns of Fatty Acid Oxidation Genes in a Heterogenic Cardiomyopathy Patient Cohort.</span></li>
<li><span id="camacho-beltran_complete_2024">Camacho-Beltrán,E. <i>et al.</i> (2024) Complete genome sequence of the Microbacterium enclense bacteriophage phiMiGM15. <i>Microbiology Resource Announcements</i>, <b>0</b>, e00302–24.</span></li>
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<h2 class="bibliography">2020</h2>
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