From 279d8fcd3402f464990878db2ef4ef91fe2f9f60 Mon Sep 17 00:00:00 2001 From: bedroesb Date: Mon, 25 Sep 2023 09:36:36 +0200 Subject: [PATCH] update readme --- README.md | 10 +++++----- setup.py | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 92a41bd..145d59a 100644 --- a/README.md +++ b/README.md @@ -94,13 +94,13 @@ You can specify ENA sample checklist using the `--checklist` parameter. By defau The command line tool will automatically fetch the correct scientific name based on the taxon ID or fetch the taxon ID based on the scientific name. Both can be given and no overwrite will be done. -- Mandatory: *alias*, *title*, *sample_description* and either *scientific_name* or *taxon_id* (preferred) +- Mandatory: *alias*, *title*, *sample_description*, *collection date*, *geographic location (country and/or sea)* and either *scientific_name* or *taxon_id* (preferred) - Optional: *common_name* -| alias | title | taxon_id | scientific_name | common_name | sample_description | -|----------------|----------------|----------|-------------------------------------------------|-------------|----------------------| -| sample_alias_4 | sample_title_2 | 2697049 | Severe acute respiratory syndrome coronavirus 2 | covid-19 | sample_description_1 | -| sample_alias_5 | sample_title_3 | 2697049 | Severe acute respiratory syndrome coronavirus 2 | covid-19 | sample_description_2 | +| alias | title | taxon_id | scientific_name | common_name | sample_description | collection date | geographic location (country and/or sea) | +|----------------|----------------|----------|-------------------------------------------------|-------------|----------------------|-----------------|------------------------------------------| +| sample_alias_4 | sample_title_2 | 2697049 | Severe acute respiratory syndrome coronavirus 2 | covid-19 | sample_description_1 | 2020-10-11 | Argentina | +| sample_alias_5 | sample_title_3 | 2697049 | Severe acute respiratory syndrome coronavirus 2 | covid-19 | sample_description_2 | 2008-01-24 | Belgium | #### Viral submissions diff --git a/setup.py b/setup.py index 7fd09ec..9b5e2b2 100644 --- a/setup.py +++ b/setup.py @@ -30,5 +30,5 @@ python_requires='>=3.5', entry_points={ 'console_scripts': ["ena-upload-cli=ena_upload.ena_upload:main"] - }, + }, )